Detail information of GWHGAAEX013146/evm.TU.scaffold_5.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2594 | 3.00E-112 | Uncharacterized conserved protein |
| nr | gi|672137879|ref|XP_008792676.1| | 1.63E-180 | PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Phoenix dactylifera] |
| Swissprot | tr|A2ZM73|CTU2_ORYSI | 5.00E-151 | Cytoplasmic tRNA 2-thiolation protein 2 {ECO:0000255|HAMAP-Rule:MF_03054} |
| trEMBL | tr|M0S8Q5|M0S8Q5_MUSAM | 2.00E-168 | Cytoplasmic tRNA 2-thiolation protein 2 {ECO:0000256|HAMAP-Rule:MF_03054} |
| TAIR | AT4G35910 | 3.00E-112 | Adenine nucleotide alpha hydrolases-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 1060721 | 1071284 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013146
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10288.8 | CTU2 | 279 | 361 | 1.30E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14169 | CTU2, NCS2 | Sulfur relay system | map04122 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0034227 | Biological Process | tRNA thio-modification |
| GO:0002098 | Biological Process | tRNA wobble uridine modification |
| GO:0000049 | Molecular Function | tRNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.470 |
| SRR2545915 | Juvenile tuber | 24.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.610 |
| SRR5643514 | five period of Gastrodia elata | 21.810 | |
| SRR5643515 | five period of Gastrodia elata | 16.030 | |
| SRR5643524 | five period of Gastrodia elata | 20.600 | |
| SRR5643525 | five period of Gastrodia elata | 15.930 | |
| SRR5643528 | five period of Gastrodia elata | 17.680 | |
| SRR5643658 | five period of Gastrodia elata | 21.170 | |
| SRR5643659 | five period of Gastrodia elata | 15.250 | |
| SRR5643660 | five period of Gastrodia elata | 14.610 | |
| SRR5643661 | five period of Gastrodia elata | 13.500 | |
| SRR5643662 | five period of Gastrodia elata | 14.590 | |
| SRR5643663 | five period of Gastrodia elata | 17.300 | |
| SRR5643664 | five period of Gastrodia elata | 14.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.400 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.400 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.52 |
| Juven | Juvenile tuber | 25.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.32 | |
| Mother_Juven | Mother tuber of Juvenile | 16.35 |