Gene detail

Detail information of GWHGAAEX013147/evm.TU.scaffold_5.66

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|78044373\|ref\|YP_360177.1\|	6.00E-29	serine/threonine protein kinase [Carboxydothermus hydrogenoformans Z-2901]
KOG	KOG0198	9.00E-143	MEKK and related serine/threonine protein kinases
nr	gi\|672137896\|ref\|XP_008792685.1\|	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	5.00E-104	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|M0S8Q6\|M0S8Q6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P17150_001}
TAIR	AT5G66850	9.00E-143	mitogen-activated protein kinase kinase kinase 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	1072950	1087132	-

Transcript Sequence
>GWHTAAEX013147 ATGCCTTGGTGGAAATCCTCCTCGTCTTCTGCATCAGCCTCAGCTCGGAAGCAATCAGCGTCTTCCTCTGCCGGTGCCTCGCCGTCGAAGAACGCGCGTAAGGAATCATCGGGCTTCCCGTGGAGCAAGCGCGGCGAATCTCCGCGTCTCGAGAGGCAGCGCAGGCTGCGTCCCTCAGGCGAGGCGGGCGCTGTGCTGGCAGTCCTGGATGCCGCGAGATCAACCCCTGTTTCGAGATCGTCGAGCAATCTCGATTCGGTTCCCCCGCGATCGACGTCCTCGCCGGTGCTGCTACCTCATCCGCTGCCATTGCCGGACCTGTCTCAGAATAATGGGGGCTGTGTTTCCATCGGGCCTTCTGCAGGTCGCCCTTTTCCCTCGCGCAAGGGCGCTGCTGGGGGAGTGGAGGAAGACGACGGGAGAAGTGGCGCGGTGGAATGCTGCGTTCCTGCTGTGATGGAAGTGAATGGGGAGAGGGTTCTTGCTTCGGCTGGAAGCAGGCCAGCTTATCATAGCATCCAGAAGACTCCTGAGCATAGTGATGCACCATTAAAGGGATACAATTTTAGCAGCCATAGGAAGGCCATTCATGATCCAAACTCTGTTGAAAATATAACTTTTAGGTTAAACATACCTACTAAAAGTGCTCCACCAAGCGGCTTCTCAAGTCCCGTGGTTAGTCCTCGGAGATTGAGTAATGTGGATGCTTTTTCTTCTACATTTCATGTTTATACTCCTGAAGTTCATTCTGTGGAATCGATAACCGGCATGTCTCCCCATGCATCTCCTGAGAAATTTTTTGAGAAAATTCATGGTAGTCCTGATAGATCACCATTGTATAGTCCAGCTATTAAAACTCCCATTTCAATGCCAAAAAATCTAAGTGCACCTCAATCTCCTCTTCATCCTAAGATGTATTCAGATGCTTCTGGTGCATGGCATGAAAATAACGTGAATGTCCACCCTTTACCACTCCCTCCTGAACCTGCTGTTCTGGTGCAACCAAGCTTTTCTTCTCAAACTACTTCAAAAAATGAGGGCGCCTCAATGACAAGCCAGTGGCAGAAGCAAAAACTAATTGGCAGTGGTACATTTGGGAATGTTTACATGGCCACCAACAGACACACGGGTGCATTATGTGCCATGAAAGAAGTTAATATAATCCCTGATGACCCTAAATCTGCTGAGTGTTTGAAACAGTTGGAACAGGAAATCAGAGTTCTTAGCATGTTGAAGCATCCCAACATTGTGCAGTACTATGGAAGTGAATTGACTGAGGATCATTTTTTCATATTCTTAGAGTATGTATTTCCTGGTTCTATTAACAAGTATGTTCAAATGTATTGCGGAGCTATGACAGAATCTGTGGTTCGCAACTTCACACGTCATATTCTTAAAGGCTTGGCTTACTTGCATAGTACAGATAACATTCACAGGGATATTAAGGGAGCGAATTTACTTGTTGATGTTAATGGTGTGGTAAAGCTTGCAGACTTTGGGATGGCGAAACATTTAAGTGGAGCTGCACCTGCCCTTTCTTTGAAGGGAACTCCATACTGGATGGCTCCAGAGGTTGTACAAGCTACAATGACAAAGGATGTTGGTTATAATTTTGCTGTTGATATTTGGAGCCTGGGTTGTACAATTATTGAGATGTTTACTGGAAAGCATCCTTGGAATGGACTCGAGGGGGCTGCTGCAATGTTCAAAGTATTGCACAAAGACCCACCCGTACCTGAGAATCTTTCATCGGAAGGCAAAGATTTTCTACATCGTTGTTTTCGAAGAAATCCTGCGGAAAGGCCGACGGCAAATATGCTGCTTGATCATCCCTTTATCCGAAACTCAAACCATTACAGTCTCCATGGTTCCATACAGACTTTTGCAGGAATCAAACTAAATGAAACGATGTACAGCCCGAGCCCGAGAGATAAACCTCGATCTAAAAGCGAACCATCGATGAAGGGAAGACTATCATCTAATGGTGAAATCAATCACTCCCATGCCGAAATTTCGGAACTCGCCGCATCCCGCCTTCCGCCCCGTTCCGCTCCGGATGCCGTCGTGCACAACCTGCTCCCGCACTCGAGTCATTCATCGACGAGCCCATCGGGATCTACGCCGAACGGATTTCACCCGGCGGGCCCTTCAATTCATTCTCCAAATGGTTTCCACTCTCCGCCGGCTTCCTCTACAGGGCTTCTTTCAAATGGCACCTATTCCTTCACTGGGCTGACCTATCATCACATACATCCCTATGCCCTGCCTAAGCCCCAACAGGTAAAAGATTTCAAAGAGGTTTGA

Network for GWHGAAEX013147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	355	613	2.10E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.960
SRP064423	SRR2545915	Juvenile tuber	40.650
SRP108465	SRR5643513	five period of Gastrodia elata	41.980
	SRR5643514	five period of Gastrodia elata	29.450
	SRR5643515	five period of Gastrodia elata	59.160
	SRR5643524	five period of Gastrodia elata	34.530
	SRR5643525	five period of Gastrodia elata	74.040
	SRR5643528	five period of Gastrodia elata	82.270
	SRR5643658	five period of Gastrodia elata	39.740
	SRR5643659	five period of Gastrodia elata	57.400
	SRR5643660	five period of Gastrodia elata	48.380
	SRR5643661	five period of Gastrodia elata	63.240
	SRR5643662	five period of Gastrodia elata	78.690
	SRR5643663	five period of Gastrodia elata	68.240
	SRR5643664	five period of Gastrodia elata	71.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.000
SRP279888	Gastro	Gastrodia elata tuber	38.90
	Juven	Juvenile tuber	35.25
	Mother_Gastro	Mother tuber of Gastrodia elata	91.03
	Mother_Juven	Mother tuber of Juvenile	131.83