Gene detail

Detail information of GWHGAAEX013168/evm.TU.scaffold_5.87

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|298205065\|emb\|CBI38361.3\|	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q94A73\|Y5656_ARATH	2.00E-170	BTB/POZ domain-containing protein At5g66560
trEMBL	tr\|F6I230\|F6I230_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60997.1}
TAIR	AT5G66560	7.00E-170	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	1396561	1401194	+

Transcript Sequence
>GWHTAAEX013168 AAAATATTTTTTCTCATAAAAAAATAAAAATTAAATTCATATTTTAAATTTAAATTTTAATTAATTGAGCAAAAAAATCGTCTTTCAAGACCAAAACTAAAAGGAAAGCCGCAATCCCCTCTGCAGTCCACAGCGCCGGCATCAATTCTCCGACATAAATAAATTAGGAATTCATAGTTTATAAAATATATCCTAAATTTTGACATAAAATTATAAAAAAGTGAGAATATATTGTTTAAATTATAAAATTATAACTAAAAACGCTTATATTATGAGCTGAGGTCTAAATAAATAAATCACTTCGTCTTCAAATTCCCCGCTTCTAGAAACCCTAACAGCGAAGACGAAGGAGAAAAAGGACGATAACTATGGCGGACGAGATGCTCGCCTCAAGAGCTCAAGCATGGTTCTGCACCACCGGCTTGCCGAGCGACGTCATAATCGAGGTCGATGGTATGGCCTTCCATCTCCACAAGTTCCCATTGATGCTCAAAAGCCGAAAGCTCCACGATCTGCTGTCAACAGAACCGGAACACAAAGACGATCGGAAGGAGATCAAAGAAGATGGAATCTGCCGGATATCTCTCCCCGATTTCCCGGCCTCGTCATCCGCCTTCGAATCCGCTGCCAAGTTCTGCTACGGCGTGAGAATCGATTTATCCTCCTCCACCGTCGCATCTATTCGCTGCGCCTCCGAGCACCTTGAAATGACCGAAGACTTCTCCGAAAACAATCTCATCCAACGCGCCGACCAGTTCATCTCTCAATCCGTCCTCCGCAGCCTCCCCCAGTCCGTGAAAACCCTCAAGTCGTGCGAATCTCTGCTCCCTCTTGCCGAAAATCTCGGCATCGCCCAGCGATGCATCGACAGCATTGCCGCCGTCGCTGTTTCCGATCACCGAGGAAGCAAAGGAACGACGGAAGAACTCACCAATCTCAACCTCCCTTTCTTCAAGCGCGTGATCTCCGCCATCAAGGAACGAAGCCCTCCCGACGCGGATATCGTAGAAGAATCTCTTGTTTCCTACGCCATCAGAATCATTCCCGGCCTCTCCCGATCCAAGCGGAATCTCAAAACGGCGCCACCTTTTCCATCCGATCCCGATCAACTGGATCTGCTCGAAATCCTAATCGCCAATCTCTCCCCGGAGTCTCAGAGCTCCGGATTAATCAGGACTCAGTTTCTCTCCGGCTTGCTCCGCACCGCCAACATCCTCCACGCTCCGGAACGGATCAAAACCGCGCTGGAGCGAAAAATCGCCGTGCAACTCGATCAGGCAACGCTCGACGATCTTCTGATGCCGAGCTATTCATGTTTGGCGGAGATGCTGTACGACGTGGAGGCCGTGGAGCGGATTCTTCGATGCTATGTGGAAGGGGCCTCGCTGGAGGCAACTGAGATCATGGTGAGATCGCCGGCTGGGATCGACAGCGGTGAAGAAGACGACGGATTGCTGAAGGTCGGAAGGCTTGTGGATGAATTTCTAGCGGAGGTGGCTTCGGATGCCAATCTCGGAGTCGATATATTCTGCGGCATCGCCCTCTTGCTTCCTGAGCAAGCTAGGGTTTATCACGACGGGCTTTACCGCGCCGTAGACGTATTCCTCAAGGCGCACCCGTCCTTGCTGGAGAACGAGAAGGAGAAGGTGAGCGGCGTGATGAACTTCAGGAAGCTAACCCTGGAAGCGTGCACTCACGCAGCCCAGAATGAGAGGCTGCCGCTGCGGGCAGTGGTCCAGGTCCTTTTTTTCGAGCAGCTGCAGCTGCGGCAGGCCGTTGCCGGAGCAACCCTCCCTTCGGCAGAGGACGACCCGCCGCCGGCGCCTTCGCCGGCGCACGAGAGCCAGCTTCTGAGGCTGGGGATGGACAGCATGCGGAGCCGGGTGCAGGACCTGGAGCGGGAGTGCTCCAGCATGCGCCAGGCCATCGAGCGGATCGACCGCACAGGGCTCGTTTTCGCCGGCGGCCGCCCGGGGCCGGCGAAAAAGTGGGGGTTTTTCGCCGGGAAGCTGGGGTGCAAGTCCAGGACTCAGGTGTTCAATTTGGATGCGGTGGGGCGACCGAAGAGATCCTCCTTCTAGAAAAGATCGGTAGGGCCGCATTCCTGTTTGAGCAATTTCAGGATTTTTGTTAAAATTAGGGATTTTTATTCTTTTTTATTTGGGTAGCATTCAAATCCTCGGATCTTCATTTCTAGCACTCGATTAGTCTTCTTCTATATTTTATAAACATAACACCCAATTTTATTTGTATATTGTTGAGATGTTTGTTTTGCTATAAATTGTACGATGAGTGTTTTGTTTGTAAATATAAAATGGTTGAGTGGTCGATATATAATTTATAATTATTTGGATGTTATGAATGTAATTTTTGTTTGCAGTGGCGCTGTGGAATTTTTCTCTTCTTCGCTTTAATTCCTGCTTGCTT

Network for GWHGAAEX013168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.30	BTB	20	116	2.90E-06
PF03000.13	NPH3	184	441	5.00E-69

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.260
SRP064423	SRR2545915	Juvenile tuber	4.540
SRP108465	SRR5643513	five period of Gastrodia elata	10.730
	SRR5643514	five period of Gastrodia elata	9.710
	SRR5643515	five period of Gastrodia elata	7.700
	SRR5643524	five period of Gastrodia elata	10.350
	SRR5643525	five period of Gastrodia elata	15.220
	SRR5643528	five period of Gastrodia elata	13.060
	SRR5643658	five period of Gastrodia elata	8.800
	SRR5643659	five period of Gastrodia elata	9.190
	SRR5643660	five period of Gastrodia elata	13.630
	SRR5643661	five period of Gastrodia elata	8.770
	SRR5643662	five period of Gastrodia elata	11.590
	SRR5643663	five period of Gastrodia elata	11.960
	SRR5643664	five period of Gastrodia elata	37.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.610
SRP279888	Gastro	Gastrodia elata tuber	16.42
	Juven	Juvenile tuber	32.79
	Mother_Gastro	Mother tuber of Gastrodia elata	58.59
	Mother_Juven	Mother tuber of Juvenile	120.18