Detail information of GWHGAAEX013172/evm.TU.scaffold_5.91


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672119577|ref|XP_008783030.1|1.63E-25PREDICTED: RPM1-interacting protein 4 isoform X1 [Phoenix dactylifera]
Swissprottr|Q8GYN5|RIN4_ARATH3.00E-10RPM1-interacting protein 4
trEMBLtr|M0UAI0|M0UAI0_MUSAM3.00E-24Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP19210_001}
TAIRAT5G558502.00E-21RPM1-interacting protein 4 (RIN4) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001614319571453374+
Transcript Sequence

Network for GWHGAAEX013172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05627.10AvrRpt-cleavage6411.60E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms40.450
SRR2545915Juvenile tuber67.140
SRP108465SRR5643513five period of Gastrodia elata37.800
SRR5643514five period of Gastrodia elata37.370
SRR5643515five period of Gastrodia elata37.090
SRR5643524five period of Gastrodia elata37.810
SRR5643525five period of Gastrodia elata48.810
SRR5643528five period of Gastrodia elata44.320
SRR5643658five period of Gastrodia elata38.050
SRR5643659five period of Gastrodia elata49.400
SRR5643660five period of Gastrodia elata64.500
SRR5643661five period of Gastrodia elata59.780
SRR5643662five period of Gastrodia elata69.980
SRR5643663five period of Gastrodia elata67.680
SRR5643664five period of Gastrodia elata76.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.840
SRR6049655Rhizomagastrodiae_C368-T10_good_130.090
SRR6049656Rhizomagastrodiae_C368-T07_good_133.630
SRR6049657Rhizomagastrodiae_C368-T07_good_132.550
SRR6049658Rhizomagastrodiae_C368-T04_good_133.210
SRR6049659Rhizomagastrodiae_C368-T04_good_133.770
SRR6049660Rhizomagastrodiae_C368-T01_good_129.720
SRR6049661Rhizomagastrodiae_C368-T04_good_137.480
SRR6049662Rhizomagastrodiae_C368-T01_good_125.500
SRR6049663Rhizomagastrodiae_C368-T01_good_117.500
SRR6049664Rhizomagastrodiae_C368-T10_good_123.480
SRR6049665Rhizomagastrodiae_C368-T10_good_123.480
SRP279888GastroGastrodia elata tuber 142.95
JuvenJuvenile tuber32.45
Mother_GastroMother tuber of Gastrodia elata 32.44
Mother_JuvenMother tuber of Juvenile 39.83