Detail information of GWHGAAEX013175/evm.TU.scaffold_5.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|271963661|ref|YP_003337857.1| | 3.00E-18 | bifunctional riboflavin kinase/FMN adenylyltransferase [Streptosporangium roseum DSM 43021] |
| nr | gi|743759796|ref|XP_010933848.1| | 9.33E-111 | PREDICTED: FAD synthetase, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|Q10BX9|RIBF_ORYSJ | 2.00E-102 | FAD synthetase, chloroplastic (Precursor) |
| trEMBL | tr|M0RGL1|M0RGL1_MUSAM | 5.00E-112 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P08850_001} |
| TAIR | AT5G23330 | 8.00E-82 | Nucleotidylyl transferase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 1494068 | 1506662 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013175
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06574.11 | FAD_syn | 112 | 261 | 1.80E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22949 | RIBF | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Riboflavin metabolism | map00740 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009231 | Biological Process | riboflavin biosynthetic process |
| GO:0003919 | Molecular Function | FMN adenylyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.540 |
| SRR2545915 | Juvenile tuber | 19.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.660 |
| SRR5643514 | five period of Gastrodia elata | 15.620 | |
| SRR5643515 | five period of Gastrodia elata | 17.450 | |
| SRR5643524 | five period of Gastrodia elata | 17.740 | |
| SRR5643525 | five period of Gastrodia elata | 29.140 | |
| SRR5643528 | five period of Gastrodia elata | 27.320 | |
| SRR5643658 | five period of Gastrodia elata | 28.530 | |
| SRR5643659 | five period of Gastrodia elata | 15.670 | |
| SRR5643660 | five period of Gastrodia elata | 18.560 | |
| SRR5643661 | five period of Gastrodia elata | 19.710 | |
| SRR5643662 | five period of Gastrodia elata | 19.100 | |
| SRR5643663 | five period of Gastrodia elata | 18.980 | |
| SRR5643664 | five period of Gastrodia elata | 20.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 28.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.18 |
| Juven | Juvenile tuber | 32.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.07 | |
| Mother_Juven | Mother tuber of Juvenile | 37.17 |