Gene detail

Detail information of GWHGAAEX013187/evm.TU.scaffold_5.106

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2370	Cactin
nr	gi\|743759691\|ref\|XP_010933314.1\|	PREDICTED: cactin [Elaeis guineensis]
Swissprot	tr\|F4I2J8\|CATIN_ARATH	Cactin
trEMBL	tr\|A0A067KBR2\|A0A067KBR2_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP29219.1}
TAIR	AT1G03910	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	1845703	1868392	+

Transcript Sequence
>GWHTAAEX013187 ATCGTCGCCTCTATCAATTCACAGACGCTGTGGACATCAAATTCTGCAACCAGACATTACTCTGAAACCCTAGCCGGATTATCTTGCCGTAGCCGTCAAATTAGCAATCTAAAAATTTTGTATATTAATTGTATGAAGCATCATCAAGGCTCCGATCGTTCTGATAATGATTCCTTGCTGAAATCTGATCGTCGGCGGAAGCACTCAACCCATCAGCACGATGATTCCGTAAAACTTCAAAGAGAACACCGACATAGCAAGTTTAGAAGTCACAGCAGACACAGTCTAGGTGACTCGTCTGGAACTGACCATCAGTCTGATTCAGGATCAGATGGACATCATAGCAAACGTACAGCTAAATCAAGTGATTATAAATCAAGAAAAATCACAGAAGAGGAAATCACGGAGTATAAGGTTCGAATGGCACAAAAGAAGGCTATTAAAGTAAATAAGAAGTTAAAGTCCCAGGCAATCTCAGGATATTCAAATGATTCAAATCCTTATGGGGATTCCAATCTCACAGAAATTTTTGTTTGGCGCAAGAAGATAGAGCGTGATGTTCTCCAGGGTAAAAATGTGGACACGTCTGTTAGTTCTGAAAAGAAGAGACGAAGAGAAATAATGGCTGAGATAGAGAAAGTTAAGAAAAGGAGAGAGGAAAGAGCGATTGAGAAAGCACAGCATGAGGAGGAAATGGCTATGCTGGCAAGGGAACGTGCCAAGGCTGAATTTCAAGATTGGGAGAAAAAAGAAGAGGAGTTCCATTTTGATCAAAGTAAGTTTAGATCTAAGATTAGATTGCGGGAGGGACGTGTTAAACCAATTGATATACTTGCCAAGAATCTCGATTGTTCAGATGATTTTGACATTGAAATAAATGAACCTTATATGGTATTTAAGGGGCTGACAGTTAGAGAAATGGAAGAGCTTTGGGAAGACATCAAAATGTATTTGGATATGGATAGATCCACTGATACTCGAATCAGATTTTGGGAGGCCTTAATGGTTGTTTGTAACTGGGAGCTAGCTGAGGCCCGGAAAAAAGATGCACTGGATCGTGCTAGGGTGCGAGGTGAAGAACCTCCTGCTGAGATTCTAGCTGAAGAAAGGGGTTTACATTCAAGTATTGAATCAGAAATAAAGGATCTCTTAGATGGAAAATCATCTATAGATTTGGAAAAAATGCAAGAAAATATTGAGTTACAAATGCAGTCTGGTTCTGCTAAGGTGGTTGAATACTGGGAAGCTGTTTTAAAACGCCTTCAAATCTACAAAGCGAAGGCTTGTTTGAGGGAAATTCATGCTGGCCTTTTGAGAAAGCATCTCTTGCATCTAGAGCAACCTGTGGAGACTGAGCAGGGCATAGAAAACGATGAAGCAGTGAAGCCTACTGATGTAGATAATGTACATGTTGCTGAGGATTGCCTAGAAATTTATGCTGAAAATGAAAAAGATGAATCAGAAAACGAGCCAGAGGATGATGCTGGTTCATTCTCTCCTGAGCTTTTGCATGGAGTTGAGGATGATGAAGCTATCAATCCTGAAGATGACCGAGCTGAACTGGACCGCAAACGCGAAGCTGTACGAATGGCAGTGCCTGATGAATTGGAAATGAAAGCAGTCAAAGCAATGGGAGCAATGGAGGATGGTGATGCTGTTTTTGGTGCTGGTGCTGAAATAAATTTAGATTCACAGCAGGTGTATTGGTGGCACGACAAGTACAGGCCTCGGAAGCCGAAGTACTTCAACAGGGTTCACACGGGGTACGAGTGGAACAAATACAATCAGACGCATTACGATCACGACAACCCTCCCCCAAAGATAGTGCAGGGCTACAAGTTCAACATTTTCTACCCCGATCTCGTCGACAAATCCAAGGCTCCCGTCTACACCATCGAGAACGACGGCCTCAGCAATGACACCTGCATCATCAGATTCCATGCCGGACCTCCCTACGAAGACATTGCCTTCAGAATAGTGAACAAGGAGTGGGAGTATTCTCATAAGAAGGGCTTCAAGTGTACGTTCGAGCGAGGAATTTTGCACGTCTACTTCAACTTCAAGCGGTACCGTTACCGGAGGTAGCGAGATCATTATTATTTGAGAATATTGCATGTGTGTATTCTCATACATTATATTCCCAAAGAAATGTGATTTGCTTAAATTTAATTTGTATATTTTAGCAATGGCATGTAATTTTAATTGCTGTTGAGATTTAATGAATATTTTTATTTAGTTAGGGGTTTATTGCTTGATTGATTTAATTATATATATATGCTCTACAAAATCTGTGTATTCACATATCACC

Network for GWHGAAEX013187

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10312.8	Cactin_mid	193	390	4.20E-57
PF09732.8	CactinC_cactus	526	650	8.00E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.440
SRP064423	SRR2545915	Juvenile tuber	66.590
SRP108465	SRR5643513	five period of Gastrodia elata	40.790
	SRR5643514	five period of Gastrodia elata	45.290
	SRR5643515	five period of Gastrodia elata	39.260
	SRR5643524	five period of Gastrodia elata	43.170
	SRR5643525	five period of Gastrodia elata	36.920
	SRR5643528	five period of Gastrodia elata	47.150
	SRR5643658	five period of Gastrodia elata	38.930
	SRR5643659	five period of Gastrodia elata	33.940
	SRR5643660	five period of Gastrodia elata	37.610
	SRR5643661	five period of Gastrodia elata	35.870
	SRR5643662	five period of Gastrodia elata	41.800
	SRR5643663	five period of Gastrodia elata	30.770
	SRR5643664	five period of Gastrodia elata	35.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.750
SRP279888	Gastro	Gastrodia elata tuber	34.93
	Juven	Juvenile tuber	35.59
	Mother_Gastro	Mother tuber of Gastrodia elata	44.02
	Mother_Juven	Mother tuber of Juvenile	37.41