Detail information of GWHGAAEX013188/evm.TU.scaffold_5.107


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302879864|ref|YP_003848428.1|0threonine dehydratase, biosynthetic [Gallionella capsiferriformans ES-2]
KOGKOG12500Threonine/serine dehydratases
nrgi|672140488|ref|XP_008794048.1|0PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Phoenix dactylifera]
Swissprottr|Q9ZSS6|THD1_ARATH0Threonine dehydratase biosynthetic, chloroplastic (Precursor)
trEMBLtr|G5CNY2|G5CNY2_LEMMI0Threonine deaminase {ECO:0000313|EMBL:AEQ28336.1}
TAIRAT3G100500L-O-methylthreonine resistant 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001618697021902117-
Transcript Sequence

Network for GWHGAAEX013188

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP1324209.20E-81
PF00585.17Thr_dehydrat_C4335236.40E-21
PF00585.17Thr_dehydrat_C5296149.90E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01754E4.3.1.19, ilvA, tdcB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006520Biological Processcellular amino acid metabolic process
GO:0009097Biological Processisoleucine biosynthetic process
GO:0004794Molecular FunctionL-threonine ammonia-lyase activity
GO:0030170Molecular Functionpyridoxal phosphate binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms118.630
SRR2545915Juvenile tuber86.460
SRP108465SRR5643513five period of Gastrodia elata55.780
SRR5643514five period of Gastrodia elata42.010
SRR5643515five period of Gastrodia elata38.520
SRR5643524five period of Gastrodia elata38.730
SRR5643525five period of Gastrodia elata56.160
SRR5643528five period of Gastrodia elata39.720
SRR5643658five period of Gastrodia elata42.580
SRR5643659five period of Gastrodia elata50.840
SRR5643660five period of Gastrodia elata63.550
SRR5643661five period of Gastrodia elata51.590
SRR5643662five period of Gastrodia elata77.970
SRR5643663five period of Gastrodia elata64.170
SRR5643664five period of Gastrodia elata85.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.700
SRR6049655Rhizomagastrodiae_C368-T10_good_162.040
SRR6049656Rhizomagastrodiae_C368-T07_good_156.090
SRR6049657Rhizomagastrodiae_C368-T07_good_168.570
SRR6049658Rhizomagastrodiae_C368-T04_good_137.060
SRR6049659Rhizomagastrodiae_C368-T04_good_141.510
SRR6049660Rhizomagastrodiae_C368-T01_good_151.970
SRR6049661Rhizomagastrodiae_C368-T04_good_143.170
SRR6049662Rhizomagastrodiae_C368-T01_good_161.500
SRR6049663Rhizomagastrodiae_C368-T01_good_160.250
SRR6049664Rhizomagastrodiae_C368-T10_good_152.700
SRR6049665Rhizomagastrodiae_C368-T10_good_152.700
SRP279888GastroGastrodia elata tuber 44.90
JuvenJuvenile tuber36.41
Mother_GastroMother tuber of Gastrodia elata 19.23
Mother_JuvenMother tuber of Juvenile 27.37