Detail information of GWHGAAEX013193/evm.TU.scaffold_5.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743763429|ref|XP_010911898.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9C8L6|PPR80_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g53600, mitochondrial (Precursor) |
| trEMBL | tr|D7T1K9|D7T1K9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI24389.3} |
| TAIR | AT1G53600 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2050836 | 2058026 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013193
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 57 | 76 | 0.75 |
| PF01535.19 | PPR | 78 | 107 | 0.00012 |
| PF01535.19 | PPR | 110 | 121 | 0.6 |
| PF01535.19 | PPR | 141 | 166 | 0.0071 |
| PF01535.19 | PPR | 177 | 199 | 0.0029 |
| PF12854.6 | PPR_1 | 202 | 228 | 2.70E-07 |
| PF13041.5 | PPR_2 | 233 | 280 | 3.00E-16 |
| PF01535.19 | PPR | 337 | 365 | 2.60E-06 |
| PF01535.19 | PPR | 368 | 396 | 8.40E-05 |
| PF01535.19 | PPR | 401 | 429 | 0.0011 |
| PF13041.5 | PPR_2 | 498 | 545 | 1.40E-12 |
| PF01535.19 | PPR | 572 | 595 | 0.016 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.620 |
| SRR2545915 | Juvenile tuber | 1.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.130 |
| SRR5643514 | five period of Gastrodia elata | 2.220 | |
| SRR5643515 | five period of Gastrodia elata | 2.170 | |
| SRR5643524 | five period of Gastrodia elata | 1.810 | |
| SRR5643525 | five period of Gastrodia elata | 0.370 | |
| SRR5643528 | five period of Gastrodia elata | 0.320 | |
| SRR5643658 | five period of Gastrodia elata | 0.130 | |
| SRR5643659 | five period of Gastrodia elata | 1.990 | |
| SRR5643660 | five period of Gastrodia elata | 1.160 | |
| SRR5643661 | five period of Gastrodia elata | 2.220 | |
| SRR5643662 | five period of Gastrodia elata | 1.420 | |
| SRR5643663 | five period of Gastrodia elata | 1.110 | |
| SRR5643664 | five period of Gastrodia elata | 1.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.44 |
| Juven | Juvenile tuber | 0.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.67 | |
| Mother_Juven | Mother tuber of Juvenile | 0.17 |