Detail information of GWHGAAEX013194/evm.TU.scaffold_5.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194336343|ref|YP_002018137.1| | 1.00E-09 | WD-40 repeat-containing protein [Pelodictyon phaeoclathratiforme BU-1] |
| KOG | KOG0771 | 6.00E-144 | Prolactin regulatory element-binding protein/Protein transport protein SEC12p |
| nr | gi|672145403|ref|XP_008796617.1| | 0 | PREDICTED: SEC12-like protein 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8GYE0|PHF1_ARATH | 2.00E-144 | SEC12-like protein 1 |
| trEMBL | tr|W9QY82|W9QY82_9ROSA | 3.00E-176 | SEC12-like protein 1 {ECO:0000313|EMBL:EXB58483.1} |
| TAIR | AT3G52190 | 6.00E-144 | phosphate transporter traffic facilitator1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2059902 | 2080188 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013194
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 114 | 135 | 0.019 |
| PF00400.31 | WD40 | 146 | 179 | 0.022 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14003 | PREB, SEC12 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 46.900 |
| SRR2545915 | Juvenile tuber | 54.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.140 |
| SRR5643514 | five period of Gastrodia elata | 33.320 | |
| SRR5643515 | five period of Gastrodia elata | 33.210 | |
| SRR5643524 | five period of Gastrodia elata | 31.880 | |
| SRR5643525 | five period of Gastrodia elata | 49.070 | |
| SRR5643528 | five period of Gastrodia elata | 52.040 | |
| SRR5643658 | five period of Gastrodia elata | 59.090 | |
| SRR5643659 | five period of Gastrodia elata | 38.260 | |
| SRR5643660 | five period of Gastrodia elata | 41.940 | |
| SRR5643661 | five period of Gastrodia elata | 39.830 | |
| SRR5643662 | five period of Gastrodia elata | 41.730 | |
| SRR5643663 | five period of Gastrodia elata | 33.740 | |
| SRR5643664 | five period of Gastrodia elata | 41.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 33.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 54.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 41.660 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.42 |
| Juven | Juvenile tuber | 41.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.10 | |
| Mother_Juven | Mother tuber of Juvenile | 46.63 |