Detail information of GWHGAAEX013196/evm.TU.scaffold_5.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434394291|ref|YP_007129238.1| | 1.00E-12 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| nr | gi|720033101|ref|XP_010266321.1| | 0 | PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q69V23|CESA3_ORYSJ | 0 | Probable cellulose synthase A catalytic subunit 3 [UDP-forming] |
| trEMBL | tr|M0U6F7|M0U6F7_MUSAM | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT5G64740 | 0 | cellulose synthase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2140721 | 2148064 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013196
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 29 | 106 | 4.80E-42 |
| PF03552.13 | Cellulose_synt | 357 | 1081 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.360 |
| SRR2545915 | Juvenile tuber | 44.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 42.170 |
| SRR5643514 | five period of Gastrodia elata | 32.020 | |
| SRR5643515 | five period of Gastrodia elata | 35.040 | |
| SRR5643524 | five period of Gastrodia elata | 33.540 | |
| SRR5643525 | five period of Gastrodia elata | 18.590 | |
| SRR5643528 | five period of Gastrodia elata | 17.130 | |
| SRR5643658 | five period of Gastrodia elata | 18.120 | |
| SRR5643659 | five period of Gastrodia elata | 51.620 | |
| SRR5643660 | five period of Gastrodia elata | 43.470 | |
| SRR5643661 | five period of Gastrodia elata | 46.070 | |
| SRR5643662 | five period of Gastrodia elata | 39.920 | |
| SRR5643663 | five period of Gastrodia elata | 50.240 | |
| SRR5643664 | five period of Gastrodia elata | 41.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 53.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 38.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 51.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 67.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 62.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.38 |
| Juven | Juvenile tuber | 55.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.94 | |
| Mother_Juven | Mother tuber of Juvenile | 111.58 |