Gene detail

Detail information of GWHGAAEX013197/evm.TU.scaffold_5.118

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|330827056\|ref\|YP_004390359.1\|	1.00E-18	nuclear protein SET [Alicycliphilus denitrificans K601]
KOG	KOG1080	9.00E-77	Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases
nr	gi\|721672563\|ref\|XP_010237026.1\|	0	PREDICTED: uncharacterized protein LOC100843412 [Brachypodium distachyon]
Swissprot	tr\|P0CB22\|ATX2_ARATH	1.00E-28	Histone-lysine N-methyltransferase ATX2
trEMBL	tr\|I1IGG5\|I1IGG5_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G01790.1}
TAIR	AT5G42400	9.00E-77	SET domain protein 25

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	2151371	2166132	+

Transcript Sequence
>GWHTAAEX013197 ATGCCTTCGTTTTGCCCATTTAGTCTTCAGGATCAATATTGCAACTCTCCTTCATCAGCGATGTTACTTTCATGCAGTGACAATCGTGATGAAACTGGTTTTTTGCATTGCGGTTGCATCCATGAGGAACTTTATTCTTCCGGAATCCATTCACCTGATTACAGTTATAAATTTTCCACAAGGAAAAAGCTCAAGACATGGGTTCCTGAATTTACTGAATCTGAAGCCAGTTCATGCATAGGTGTTGTTGACAATATTGATCTTAATGGAAACTTTGAATGTAGCTCCTCACATCAGTTCTCAGACTGGAATAACAGGTCTTCAAGTAGCAGCTGTCTACCTGAAAAGTTTGGCTCGTCTGTCGCAATGGAAGGAGGTTCGATGTCCGCAAATAGTAATAGTGGTATTTCTTGGGCTTATAGCGGGGGCACAATGGTAGGCCATGATAACAATCATGGTGGATATTCTCAACAAAGCTATGTGAGTGGTTGGATGTATGTAAATGAAAATGGGCAACTTTGTGGTCCTTATACCCAACAACAGCTGGATGAGGGGCTATCTACTGGATTTCTGCCAGAGGGTCTTCTTGTTTATCCAGTAATAAATGGAACTTTGACTAATCCTGTGTATTTGAAATATATAAACCACTTGTCAAATTCATACTGTTCGGTAAATTCTCAAAATATGATGCCGGGTGCTTCCAATGGTCTTACAGTTTGTATTCCTGCATCTCATACACAGAGTACATCTTCTAGCTTGTCTACCTTGCATTTAAATCAGCATTCTTCTGCTCAGACAACTGCTATAGTTGCTTCTGCGTCTCATGAGCCTCAGAAACTGAATATTGGAATTACTAAATGTGCCACTTCAAGGCTTTCAATGTTGATTTTGAGCGAAGAATCAAATTGGTTGTTTGAGGATGAGGAAGGTAGAAAACACGGGCCTCATTCTTTTGCCGAACTTTATTATTGGCATAGCAGCAGCTATCTTCATGATTCATCAATGATACACCACATAGACAGCAAGTGCGGTCCTTTCACACTTTCAACTTTAGTTGAAGAGTGGTGCAGAATTCAAAATAATTCTGAAGCAGATGCTTGTGGTGGTAGCTCTGATTCAGTTAGTAGATTCATATCTGAGGTGTCAGAAGATGTATCAGTTCAGCTGCATTCTGTTATTTCTAAAGCAGCTCGGCGAGTTTTTCTGGATGAAATAATAAGCACTATTATGCCAGAGATATTTGCTTCTAGGAAGACTCGGAAACATCACAAACTAGAATCAGCGTGCAAGAATGCTAAGCATTCTAGTGTTTTTGTGAAAGAGTCAACAATCGCGATTAATAAGAAACCTTCTGCAGTCAGTGGCAGATGTAGCATTCCTTTGAAAGTGAAGAATGAACCAAAAATGCCTTCCGCTTCTCCTACAGATTGTCCTATTACTGATGATTTGCCTTTGGACACCATTAATAAATTGTCTGAGATATTGTTAGAGGTTTATAAAGCATTTTACTATGATAGCATGAAAGTTCTGTGGAGCAATGCCTTGTTTGAAACTGTTTATGACTGCATTGCAAAGTGGCTTAAAAGAAAGCGGTGGTCTGATCAACCTGTTTTGCCCATCAGTTCTGTATCTTTTGTGGTGGATGTCAAAAATGTAAATGAGGTTCAGAAAAGTACTACAGAAGCAACTGATATTGTATGTTTACATGACAAGAATTTGCTTTATTGTTTAAATTTCATCCAGGCTGATTCCGTACCACAACCATGCAACCTTGAAATGGATTTCCCTCCAGGTTTTGGCCCTGAAGTTAGAGATATTGATATATTATCATGCTCTCAACCTGAAAGCTCACCTTCTGAAGACCTTGAGACAAAAAACATTGATTCTTCTTGTGTTGATATGCTTTCTATCACCTTTAAGGAAGTGCAAAGAGCCTTAGAGAGTGAACTATTTTTATCAACCAAGAAATCTTTGTTTGAGCATTATGAAGATGTTTTAAGGGTGGAATTGACAAAAATTCTTTGCCTTGAAGCAGAAAGTAAAGTTAGCAAGGCAAAAAGCGTTGAAGATTTTTCAAATGAAACCCCAAGCGCTGAGGAGAAGGGTATTGAAGTTGAGGCTGAACGTGTGGATCATACGGAGGTGAAAATCACTGAAAAATTTATGGAATACTCTGTGGTTGAAACACAAACTACTGAAGAAGTGGATGGTGTAGGGGTTAAAGATGAACTTGTGCATCGTATTGTGAAAGACCTTTTTGTGGAAGAGTGTGTGCATCATATTGAGATGAAAATTACTGATGATTTCCTGCAATACTCTCTGGATGAATCACAAACTGTTGAACAGATGGCTGTAGAGGTTGCGACTGAACTTGTGGATCATAAGGAGGTAACAGGTGATCAGAGCACATCCCATTTCCCACTTGATTTCTGTAATGCTTTTGAAGTCTCTATTGATTTGGCAGAAGATCAAGGATTGGCAAAAGCTTTTGAAAGAATGGGCCCTCCTATGGTTAATAAATTGGAGGAAGAGATTGCTGATGAGCTGCTACCTCCGGGACTGGATGCCTATGATACTACCATGTCGATGGCTTTGTTTAAGAAGAATAAATTTCGACCTTCTGGGCGCAGTGAAAATGTCACTACAATGGGCAAATATGTTGCAATCGCTATTTTCCGGCAGAAGCTTCATGATGAATTTCTAAAAGAGTGGGGATCTTCTCACCTTGTTAACTTTCTTCATGATTGTTTTGCTTCATGCTCTTATTTTACTAGACATGAAGTGGATCATGTAGCTGATATCCCTGAAGGTGACATCATGAACAAATCGCTCATGAATGTTTCCAAATCTCTTGAGCAAAGTGAAAGGCCATCCCGTACTTTTTTGAATGGGAAGTTGACATACTTTAGAAAGAAAAAACAGCGCAAGCAAATGACTGAGCCATTGCTCAACTGCTCTGAATTGATTCACAAAGTGATCGATATCTCAAGAGATCAGTTACCTAATGTAAGCGAAGCTGAGCCAACTTTACCACAAAGAGTTGATAAGAATTCTGAGTTGAAAGAGCTAGATGCAAATCGAGTTGGTTTTTCATCGTTGCCTATTTGGAAGGAAATTAATTTGCATGACACCTCCAATTCAACAATGAAAAAGACCTGCACATTGAGCAAGGAGGGTTTTATTGATGATAGAAGAATTAATGCAAAACAAGTTTCAGTTTCTGAACATGATTCAGCTAAAACTGAGACAACCGTTGATTCTTGTCCAATGCATATGGATTTTCAGGAGCCCAAAAATCTTTCTTCTGAAAAGTTTTATTCAAGTTTGAAAAGGAAAACAATTAATCAGTTAGCTCTCTCTACCAAGGCAGCAAAAATTTCTAAGAAAGCTAAAGTTAAAAAGGGAACCCACAACGGGTCATTCAGGCGAATTGTTAAACCCTTAAAGCTAGTTTTTCCATGCCCAAAGGCAGACGGCTCTGCTCGATCTTCTATTAAGGGTTGGGATTGGCGTCAATGGTCACGGAATGCACTTCCATCTGAGAGAGCTCGTAGGAGAGGAAGCCGCGATGCTGTTTCTCATGGGTTAGGTTCTGAAGCCTTTGGAAATCAAAATTCTATTATTAAAGGTCCTTCAGCAAGAACAAACAGGGCTAAGTTGCGCAACCTCTTAGCTGCTGCTGAAGGTGCTGAGCTTTTAAAAGTCACTCAGTTGAAGGCAAGGAAAAAGCGTTTACGTTTTCAAAGGAGCAAGATACATGATTGGGGTCTTGTTGCACTTGAACCAATTGAGGCAGAAGATTTTGTGATTGAGTATGTAGGAGAATTAATTCGTCGTCGGGTTGATGCTACCAAACGTGGAGGGTTAGCAAGATTTATTAATCATTCATGCGAGCCAAATTGTTACACAAAGGTGATAACAGTTGATGGTCAAAAGAAGATCTTTATTTATGCAAAGCGTCATATATTTACGGGTGAAGAGCTTACATACAACTACAAATTTCCATTGGAAGAGCAAAAGATACCCTGCAATTGTGGCTCCAAAAGGTGTAGAGGATCAATGAACTAA

Network for GWHGAAEX013197

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.27	SET	1283	1332	1.80E-13

Protein Sequence

>GWHPAAEX013197
MPSFCPFSLQDQYCNSPSSAMLLSCSDNRDETGFLHCGCIHEELYSSGIHSPDYSYKFSTRKKLKTWVPEFTESEASSCIGVVDNIDLNGNFECSSSHQFSDWNNRSSSSSCLPEKFGSSVAMEGGSMSANSNSGISWAYSGGTMVGHDNNHGGYSQQSYVSGWMYVNENGQLCGPYTQQQLDEGLSTGFLPEGLLVYPVINGTLTNPVYLKYINHLSNSYCSVNSQNMMPGASNGLTVCIPASHTQSTSSSLSTLHLNQHSSAQTTAIVASASHEPQKLNIGITKCATSRLSMLILSEESNWLFEDEEGRKHGPHSFAELYYWHSSSYLHDSSMIHHIDSKCGPFTLSTLVEEWCRIQNNSEADACGGSSDSVSRFISEVSEDVSVQLHSVISKAARRVFLDEIISTIMPEIFASRKTRKHHKLESACKNAKHSSVFVKESTIAINKKPSAVSGRCSIPLKVKNEPKMPSASPTDCPITDDLPLDTINKLSEILLEVYKAFYYDSMKVLWSNALFETVYDCIAKWLKRKRWSDQPVLPISSVSFVVDVKNVNEVQKSTTEATDIVCLHDKNLLYCLNFIQADSVPQPCNLEMDFPPGFGPEVRDIDILSCSQPESSPSEDLETKNIDSSCVDMLSITFKEVQRALESELFLSTKKSLFEHYEDVLRVELTKILCLEAESKVSKAKSVEDFSNETPSAEEKGIEVEAERVDHTEVKITEKFMEYSVVETQTTEEVDGVGVKDELVHRIVKDLFVEECVHHIEMKITDDFLQYSLDESQTVEQMAVEVATELVDHKEVTGDQSTSHFPLDFCNAFEVSIDLAEDQGLAKAFERMGPPMVNKLEEEIADELLPPGLDAYDTTMSMALFKKNKFRPSGRSENVTTMGKYVAIAIFRQKLHDEFLKEWGSSHLVNFLHDCFASCSYFTRHEVDHVADIPEGDIMNKSLMNVSKSLEQSERPSRTFLNGKLTYFRKKKQRKQMTEPLLNCSELIHKVIDISRDQLPNVSEAEPTLPQRVDKNSELKELDANRVGFSSLPIWKEINLHDTSNSTMKKTCTLSKEGFIDDRRINAKQVSVSEHDSAKTETTVDSCPMHMDFQEPKNLSSEKFYSSLKRKTINQLALSTKAAKISKKAKVKKGTHNGSFRRIVKPLKLVFPCPKADGSARSSIKGWDWRQWSRNALPSERARRRGSRDAVSHGLGSEAFGNQNSIIKGPSARTNRAKLRNLLAAAEGAELLKVTQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYVGELIRRRVDATKRGGLARFINHSCEPNCYTKVITVDGQKKIFIYAKRHIFTGEELTYNYKFPLEEQKIPCNCGSKRCRGSMN

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.960
SRP064423	SRR2545915	Juvenile tuber	22.050
SRP108465	SRR5643513	five period of Gastrodia elata	10.450
	SRR5643514	five period of Gastrodia elata	9.440
	SRR5643515	five period of Gastrodia elata	11.970
	SRR5643524	five period of Gastrodia elata	10.390
	SRR5643525	five period of Gastrodia elata	17.680
	SRR5643528	five period of Gastrodia elata	19.460
	SRR5643658	five period of Gastrodia elata	12.930
	SRR5643659	five period of Gastrodia elata	14.440
	SRR5643660	five period of Gastrodia elata	16.250
	SRR5643661	five period of Gastrodia elata	15.330
	SRR5643662	five period of Gastrodia elata	18.340
	SRR5643663	five period of Gastrodia elata	16.480
	SRR5643664	five period of Gastrodia elata	17.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.740
SRP279888	Gastro	Gastrodia elata tuber	19.81
	Juven	Juvenile tuber	8.90
	Mother_Gastro	Mother tuber of Gastrodia elata	16.88
	Mother_Juven	Mother tuber of Juvenile	13.55