Detail information of GWHGAAEX013201/evm.TU.scaffold_5.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186683200|ref|YP_001866396.1| | 8.00E-12 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| KOG | KOG0027 | 2.00E-39 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|743892714|ref|XP_010911621.1| | 6.76E-53 | PREDICTED: putative calcium-binding protein CML19 [Elaeis guineensis] |
| Swissprot | tr|Q8RYJ8|CML19_ORYSJ | 4.00E-44 | Putative calcium-binding protein CML19 |
| trEMBL | tr|D2CIU9|D2CIU9_ELAGV | 7.00E-51 | Calmodulin-like protein {ECO:0000313|EMBL:ABP04242.1} (Fragment) |
| TAIR | AT1G76640 | 2.00E-39 | Calcium-binding EF-hand family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2218458 | 2219196 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013201
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13833.5 | EF-hand_8 | 30 | 77 | 2.20E-09 |
| PF13833.5 | EF-hand_8 | 103 | 151 | 3.60E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.620 |
| SRR2545915 | Juvenile tuber | 5.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.250 |
| SRR5643514 | five period of Gastrodia elata | 1.020 | |
| SRR5643515 | five period of Gastrodia elata | 17.040 | |
| SRR5643524 | five period of Gastrodia elata | 3.000 | |
| SRR5643525 | five period of Gastrodia elata | 20.150 | |
| SRR5643528 | five period of Gastrodia elata | 36.960 | |
| SRR5643658 | five period of Gastrodia elata | 6.730 | |
| SRR5643659 | five period of Gastrodia elata | 15.750 | |
| SRR5643660 | five period of Gastrodia elata | 2.170 | |
| SRR5643661 | five period of Gastrodia elata | 6.000 | |
| SRR5643662 | five period of Gastrodia elata | 9.730 | |
| SRR5643663 | five period of Gastrodia elata | 6.000 | |
| SRR5643664 | five period of Gastrodia elata | 17.370 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.18 |
| Juven | Juvenile tuber | 0.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 262.10 | |
| Mother_Juven | Mother tuber of Juvenile | 153.17 |