Detail information of GWHGAAEX013206/evm.TU.scaffold_5.129


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17561.00E-69Histone 2A
nrgi|672114329|ref|XP_008776490.1|1.66E-72PREDICTED: histone H2A [Phoenix dactylifera]
Swissprottr|P25469|H2A1_SOLLC3.00E-74Histone H2A.1
trEMBLtr|A0A022QLV9|A0A022QLV9_ERYGU9.00E-76Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIRAT5G025601.00E-69histone H2A 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001623362652336795+
Transcript Sequence

Network for GWHGAAEX013206

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone18972.00E-12
PF16211.4Histone_H2A_C1001314.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0005634Cellular Componentnucleus
GO:0000786Cellular Componentnucleosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.840
SRR2545915Juvenile tuber59.860
SRP108465SRR5643513five period of Gastrodia elata162.490
SRR5643514five period of Gastrodia elata262.230
SRR5643515five period of Gastrodia elata112.350
SRR5643524five period of Gastrodia elata153.150
SRR5643525five period of Gastrodia elata236.220
SRR5643528five period of Gastrodia elata137.820
SRR5643658five period of Gastrodia elata187.570
SRR5643659five period of Gastrodia elata87.010
SRR5643660five period of Gastrodia elata91.690
SRR5643661five period of Gastrodia elata79.170
SRR5643662five period of Gastrodia elata82.490
SRR5643663five period of Gastrodia elata90.640
SRR5643664five period of Gastrodia elata64.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1161.960
SRR6049655Rhizomagastrodiae_C368-T10_good_1131.130
SRR6049656Rhizomagastrodiae_C368-T07_good_1181.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1152.680
SRR6049658Rhizomagastrodiae_C368-T04_good_171.170
SRR6049659Rhizomagastrodiae_C368-T04_good_160.570
SRR6049660Rhizomagastrodiae_C368-T01_good_192.540
SRR6049661Rhizomagastrodiae_C368-T04_good_1113.740
SRR6049662Rhizomagastrodiae_C368-T01_good_1173.710
SRR6049663Rhizomagastrodiae_C368-T01_good_182.360
SRR6049664Rhizomagastrodiae_C368-T10_good_1329.860
SRR6049665Rhizomagastrodiae_C368-T10_good_1329.860
SRP279888GastroGastrodia elata tuber 100.71
JuvenJuvenile tuber120.54
Mother_GastroMother tuber of Gastrodia elata 104.89
Mother_JuvenMother tuber of Juvenile 60.50