Gene detail

Detail information of GWHGAAEX013212/evm.TU.scaffold_5.135

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|111025792\|ref\|YP_708212.1\|	2.00E-25	lipase/esterase [Rhodococcus jostii RHA1]
KOG	KOG1515	3.00E-83	Arylacetamide deacetylase
nr	gi\|743878963\|ref\|XP_010908310.1\|	1.53E-150	PREDICTED: probable carboxylesterase 15 [Elaeis guineensis]
Swissprot	tr\|Q9FG13\|CXE15_ARATH	8.00E-84	Probable carboxylesterase 15
trEMBL	tr\|Q8H3K4\|Q8H3K4_ORYSJ	4.00E-140	cDNA clone:002-100-G01, full insert sequence {ECO:0000313\|EMBL:BAG97662.1}
TAIR	AT5G06570	3.00E-83	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	2497969	2499398	+

Transcript Sequence
>GWHTAAEX013212 ATTTTTTTTTCAAATAAATCATATTAAGAATATCTCTTCCCATCTGTATAGCACTTGCCTTGTCAAAACTTACCTCCCTACAAACCAAGTCTTCTTCTTTATTCAAACTCAACCCCACCATGCCTCCCCCAACTGTCTCCGGCCTCGTCGAAGTCGAGAACTGCCGCAACGTTCTCCGCATCTTCAGCGATGGCTCGATCCTCCGGGACGCAACCCCAAGCTTTCTCATCCCCGTCGATGACGACGGGTCGATAGAGTGGTCCGACGTCGTTTTCGACGAAGCCCGCGGGCTCCGTCTCCGCCTGTACCGACCCCGTTGCCGACTCCACGCCCACTCCGCCAATCTTCCCATCTTCTACTACTTCCATGGTGGCGGCTTCTGCATCGGGTCGCGCACGTGGCCCAATGTCCACAACTATTGCCTCCGCCTGTCTGCCGATCTCGGCGTAATCGTCGTTTCCCCCGACTACCGCCTTGCCCCCGAAAGCCGCCTCCCAGCCGCTCTCGAAGACTCGATAGAATCCGTCCTCTGGCTTCGCTCCGAGGCTCGCTCCCCGAACCCTAACCCGCTCCTCGAATCCGCAGACTTCAAACTCTTGTTCATTTCCGGCGACTCCGCCGGAGGCACCATCGCCCACCACCTCGCGGTCCGGTTCGGCTTGGACGCAAACCGGCTCGCACTGGAACCGGTCGTGATACGAGGGTATGTCCAACTCATGCCGTTCTTCGGCGGGATCCAGCGCACCAGATCGGAGGAGGATTGCCCTAGTGATGCCTTCTTGGATCTAGAGCTCAATGACAGGTTTTGGCGGCTGTCGCTCCCGGCCGGGTCCACCGCAGATGATCCCATCTCGAACCCGTTCGGTCCGGGCGGACCGGATTTGAGCCCGGTTCGGTTTGAGCCGACTCTGGTGGTAGTCGGGGAAAAGGATTTGCTGAGGGACAGAGCGGTGGAGTACGGAGAGAGACTGAAGGGATTCGGAAATCCGGTCCAGGTGCTGGATTTTGAGGGCCAGCAGCACGGGTTTTTCACCATCCAGCCCCGGTCTGAACCGGCTGGTATGCTGATGCAGAGAATCCGCGGGTTCATGGCTGAAAACGGGTGCAAGTTCGGGTGAACCGGGTTCTTTCGCGGATGTGCTTGCCCTGATGCTAATTATGTTCTTAATTATCAGATTAAGAGTAATTACTTACCTGCTTTGAATTCTCTTACTGGTACAGTGATGAAAAAATAACTAACAAGTGGTTAATGTCGACAAAATCCAAGAAGTTTTAAGAATATTTAATTAATTTTGAAGAAAATTTTAAAAGGTTAATAATAACCACTAAAATTAGATGTATTCCTTGTGTCTTAAAAATAAATAAGAAAGTAATAAATTTGGATAAGAATGAAACTTTGAGAAATAATATTTAGACATGTTTATCTGTGC

Network for GWHGAAEX013212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07859.12	Abhydrolase_3	80	304	1.60E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.500
SRP064423	SRR2545915	Juvenile tuber	2.320
SRP108465	SRR5643513	five period of Gastrodia elata	11.890
	SRR5643514	five period of Gastrodia elata	9.230
	SRR5643515	five period of Gastrodia elata	7.030
	SRR5643524	five period of Gastrodia elata	8.410
	SRR5643525	five period of Gastrodia elata	9.500
	SRR5643528	five period of Gastrodia elata	12.880
	SRR5643658	five period of Gastrodia elata	10.580
	SRR5643659	five period of Gastrodia elata	6.680
	SRR5643660	five period of Gastrodia elata	6.450
	SRR5643661	five period of Gastrodia elata	4.470
	SRR5643662	five period of Gastrodia elata	5.320
	SRR5643663	five period of Gastrodia elata	6.050
	SRR5643664	five period of Gastrodia elata	4.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.570
SRP279888	Gastro	Gastrodia elata tuber	19.65
	Juven	Juvenile tuber	12.01
	Mother_Gastro	Mother tuber of Gastrodia elata	15.00
	Mother_Juven	Mother tuber of Juvenile	15.28