Gene detail

Detail information of GWHGAAEX013213/evm.TU.scaffold_5.136

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|320103894\|ref\|YP_004179485.1\|	8.00E-24	serine/threonine protein kinase [Isosphaera pallida ATCC 43644]
KOG	KOG1187	0	Serine/threonine protein kinase
nr	gi\|672110108\|ref\|XP_008793607.1\|	0	PREDICTED: serine/threonine-protein kinase At3g07070-like [Phoenix dactylifera]
Swissprot	tr\|Q9SFT7\|Y3707_ARATH	0	Serine/threonine-protein kinase At3g07070
trEMBL	tr\|A0A061DPC8\|A0A061DPC8_THECC	0	Kinase superfamily protein {ECO:0000313\|EMBL:EOX93951.1}
TAIR	AT3G07070	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	2511489	2526318	+

Transcript Sequence
>GWHTAAEX013213 CAGAAGCCGTTGCTAGATTCTTCGCTCCTATCTTCAATACGAACCAATCTCCGCGGATTCGGCTCTTCCGCTCAAACCTCGTCCTCAGATCCTACCGCCCTTCTTCGGAGAAAGTCTCAGTTATCAGAACAACCCAATGCCTCTCTGCCCTTTTCCTTTCTCAGGCCCCAAAATCAGCCATTTTCACCTTTTTAACATCCTGACCCATCCCACCACTCGCCGTCAAACCCCCTTCTTCGCTTTTCCCCCTTATGTTCCCCATCCGATTTTGTTATATTTGCTGAATGTGCCTGGAAAGCCTCCTTTTCTCTTGATTCTCGAAGAAGCATCGAATCGAGCTTTTGACAGATTTCGTAGATGAGCTGCTTTTCATGTTTCTCATCCGATGGGAAGAAGCCGACAAAGAAGCGCGATGCGAGGATCAGAACTGCTGCGCCGACGGCGACATTAGCTGAGGTTCTCAATCCGGAGAGGAGCGAACCAGCTTCGAAGTTCGGAGTTGTCAAGCAAAGGGCTACAACTGAAATAACAACAACAGCTATGACAACAACAACAGATAAAAGAGACACCGGGAATGGAAACATTGCAGCACAAACGTTCACCTTTCGCGAACTTGCCACTGCTACTAAGAACTTCCGCCCAGAATGCTTTCTTGGCGAAGGAGGATTTGGAAGAGTTTACAAGGGCCGACTCGAAAACACTGGCCAGATTGTAGCTGTTAAGCAGCTGGATAGGAATGGCCTTCAAGGAAACAAGGAGTTCCTTGTAGAGGTTCTCATGCTCAGCCTCCTCCATCATGAATACCTTGTCAACCTCATTGGTTACTGTGCAGATGGTGATCAAAGGCTTCTGGTTTATGAGTACATGGCTCTGGGTTCTTTAGAAGATCATTTACTTGATATATCACCGAACCGAAAGCCCCTCAGTTGGTTCACAAGAATGAAGATAGGTTTTGGTGCAGCTAAAGGACTAGAGTATTTACATGAAAAAGCCAACCCTCCAGTGATCTACCGTGATCTCAAATCATCAAACATCTTACTCGACGAGAACCACAACCCAAAGCTTTCAGATTTTGGTCTTGCTAAGCTCGGTTCCGTTGATGACAAGGCCAATGTGTCATCTAGAGTGATGGGAACGTATGGCTACTGTGCGCCGGAGTATGCCAGGACCGGCCAGCTCACTCTTAAGTCTGATGTTTATAGCTTCGGAGTGGTGCTTCTGGAGCTTATCACCGGGAAAAGGGTCATTGATACAACGAGGCCAAATATGGAGCAGAATCTCGTCGCCTTGGCACAGCCCATATTCAAAGACCAAAAAAGATATTCAGAGCTAGCAGATCCCCTTCTCCAAGGAAACTTCCCCCCAAGAGGCTTGAACCAAGCAGTAGCAGTCGCTGCAATGTGCCTACAGGAGGAGGCTTCAGTCCGGCCAGCAATGGCAGATGTAGTGGTAGCCCTCAGCTGCCTCCAAGAATCGCCATCTGGCATGACCGAAGAGGACTCCGGCCATTGCCGGCCGATTTTGGAGTCACTAGAAGATGACGCTTCTGATAAACACGGACTAATTGAAGAGACTGGGATGGATCGCCAGCGTGCAGTCGCAGAGGCCATCCAGTGGGGCGCTAACAGTTCCAGAAATGTTCAGAGGCTAGGGCATGGGACAGGCTTTTCGTAAGCTATATCTATGGAGAAGATTTGGTATGTACCAATCTTATGATTGTGTTTTAATAATTGTTTCTTATAAAGTAAAGAGTCTATTGGGGGGTAGTGTTTCTCTTTCTATGTATATAAGATGACTCTGAATATCTGTTAACCATAATTTTATATGCTGTGAAGTTAACAGAGAATGATACGAATGTCTACTATTTTTATGAAAAAGATGTACAACATTATTGTATGTTCTTACTTTCATACATTGTTTATATTGGTTTAATAATCTGGC

Network for GWHGAAEX013213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	98	363	4.30E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.460
SRP064423	SRR2545915	Juvenile tuber	3.390
SRP108465	SRR5643513	five period of Gastrodia elata	1.510
	SRR5643514	five period of Gastrodia elata	2.130
	SRR5643515	five period of Gastrodia elata	1.940
	SRR5643524	five period of Gastrodia elata	1.860
	SRR5643525	five period of Gastrodia elata	4.260
	SRR5643528	five period of Gastrodia elata	6.330
	SRR5643658	five period of Gastrodia elata	5.880
	SRR5643659	five period of Gastrodia elata	2.700
	SRR5643660	five period of Gastrodia elata	3.270
	SRR5643661	five period of Gastrodia elata	4.330
	SRR5643662	five period of Gastrodia elata	5.210
	SRR5643663	five period of Gastrodia elata	3.610
	SRR5643664	five period of Gastrodia elata	4.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.540
SRP279888	Gastro	Gastrodia elata tuber	4.08
	Juven	Juvenile tuber	1.46
	Mother_Gastro	Mother tuber of Gastrodia elata	3.00
	Mother_Juven	Mother tuber of Juvenile	2.12