Gene detail

Detail information of GWHGAAEX013219/evm.TU.scaffold_5.141

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	4.00E-31	FOG: Predicted E3 ubiquitin ligase
nr	gi\|743781390\|ref\|XP_010920876.1\|	2.32E-52	PREDICTED: E3 ubiquitin-protein ligase RLIM-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	8.00E-32	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|A0A061ET19\|A0A061ET19_THECC	3.00E-45	RING/U-box domain-containing protein, putative isoform 1 {ECO:0000313\|EMBL:EOY07793.1}
TAIR	AT4G31450	4.00E-31	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	2574242	2610922	+

Transcript Sequence
>GWHTAAEX013219 TTGTCATGGATTTTTTTGGTGGTCTTCTTCATTTTTCTTTAACATTGGCAAAACTTGTAGAACTTTTCTAGCAGGGCATCAAATAGTCTATACTTAATGTTCTCAAATCATCTAAGACGACTTTTTAAGCTTATCCTCAATAGAATCCACTTCCGTGCTACAAATGAACTCTTGTATCATCATATCCTTTCATATTCACTCATTATTCTTAGCGTCCTTTTCTCAGCGAGTCTTATTTTAGTTACATTGCTCTTCTTATTGCTATCATATAAAAATTTGTTTAAATTTAGTAATGTTTTATTTTTTTCAATCGCACGACACACTATCTTCCTTGTCGTTGAACCTGACCCAAGATTTTTTTCCTCATTCATTTCTTCAACATTTTCACTTCTATTTTATTAAACTTGCACACTATTTCGTTATGGATACTAAGATGGAGTCCTTTAAATCTTAAGGTAGTTCTCCATAACTCAAGTTTAACTTTAGTCTTATCTCTTGTTTTGTTAAAACAGAATCCTTTAGATTCTAAGGTGTTTTATTGAACTCATATGTTTTTGCTATTTCACCATAAAGGATTCCATACAAGCATTATATATTTTGGGGACTGCAAAATATTTTATTTCCTTACCGGGTCTTTTTTGGTCAAACAATTGAGACATCTGTGTTAAATACAAATGGAGGAATTCCAAGAGACCATAGAATTACTTTGTCAGATATTCATGTAAGCTGTGCTAGCTTATACTTGACAATCAGTTGAAAAATTACAAGCCACTATTTAATCCACGTGCATAAAAGTTTAAAGTTAGGGCCCTGCTCTAGATTTTACATAATTGCCTTGAAAATTAAATACTCTGCAATTGGCTCCATCCTTGCTTTTCAAAATCACAAATGGGTCTACAGTTGATCTTCAAGATAATTGAAAACTTTGTAATAAATGTTTTTTTCCATGTCACATAAGGTCACAACTCATCATGGATATTTCAGCTTACAATTGTAAAATACAATGCATTCTGCTATCAATAACTTATATTCCACATGCACACTATAAGATTGAAGACTATTGACTGTAGGTTCTCTCGATTACATCTTTTTACGCAACTATAGTTCCATTTTTTGGTGAGCTTACAGCTGGGTAAAGCCTGATTTTTGCTGGAGGATATGATAGACATCTGATTACCCATCATGCTTAAACAGCTTATAACATTTGAAAGCAGGATTGACCTTGAATATTTTTTATATTTTGCATGTGTAGTGACAAACATTATTTGTCCTTGTATATGAGGCTGATTGGCCTACATTGAGGATGATCTCCTGGTTTAACACTAGATTCTTATATATGACTAAATATCTTGATGAGCAGTATTTCTTGGAATTGAATGCATAGCTATAATGTGCGGGTGGTCTGACTAATGAAGCCATTTGCGGAAAAGCAGTCTGTTATTGAATGTAACAGAATTTGTTATGTCATTTTAAAGTTCAGTGAAGAAAAAATGTATGATGGATGGATATACACCTTATTTAATGAACTTCATGAAAGGTATTGATTTTGTGCCTGCCAGTGTACAGGAATGGTCACATCTCTTCATTATGAATTCTTCTAGGTCAAAATAAACTCTTGTTCCATTCATTAATATCTTCCTCCCTGTTATTTACATCCCTTTTTCTGCCATGTCCAAAATCATTAATCCTATAATCATTTGCTTACAAGGCATGTATAATAGTTTTTTAAATGATGCAATGGGCTACGAGGCATTGCTTGGGGATGAATTTTGTTGAGGGTTGAACTGTAATGGAAAGGGTTGCAATCTCTGTAAACGTAAAAAAAGTTAACCTGCAGTTATCAGGAGTTTTATCGGAATCTTTCAGAAAATCCTTCCCTATGAACGTGACTGTTGGCAGCTATGGTTGTTTCTTTCTAAAAATGGCTCTCAGGAGGCTGTGTACTGCACTTTGCTGGAAAAAAAATGGATGAGTACTTTTTTGAACAAGCTAGTTGACCATAAAAACATTCCATTATCTTGATAAACACTATCATCGTTAGTTTTATCTCAGCTATTTTTGTTGACTTGTAGCATTTCGTGTTCCCTTGAAGGTTTTGCTTATGCTCCAGATCATCACCATTAGGTTTATCCCAGCTATTTAGGAGTATCTTTTCTGGTCGTTAGCAATCTCAAATCCTGCTTAATCTTTCCAAGCTCAATCCTATCATATTTCATGCAACTAGGGCAAGGGTACAGTAAGTTTGTATTTACTTAACTATTTTCTGGGGTAAATTTGTGTGGAAGGCCAATTCCTTTTGGTGTTCTGTGCATACTCTCGGTGATTCGGAGAATTAAAGCAAAAAAACCTTGACCTTGCCTTTGGAATATGACACGCTGGAATAATAGGTTACCAACTACTGAGTTTCATCCCTTCCACCCAGCCAATTCTCGAAATCCTAATCCTAGAAGGCATTTTGAAAGTACCTTGCTGGTACCTACTGAGATTATCACATTTAATCATGGTGTGAGGCTTCCAAATCCCCATCCTACTAATTCTGGAGCATTTCATGATCGTTATCATTACCCTCCATCATCTGATGGTTTCAACCAAAGTTCAGCATTTGCTGCTCAATGTGCACCATTCCGTTATGATCCACGAACTTGTGGGAATGGCTCTAGCAGGTTTTGTCATTCAGAGGAAACTATCAGTCTTGCATATAAAAGAAAACGCACTACTGCACACCTAGAACATCAGAATGATCTTGGATATTACACTAATAGGAATGTGAGAAGCAGGCATGATAATGCTTCTTTTAATTTATCATGGCAATGTTCATCATCAAGCAACCCACCTCGTCAAATAAGCAATTCAATGAATAATTCCAACAATGTAGCCGGGCACCGGGATCATGCTACTTTAACTGGGATTCATTCCCAATGGAGTCATCCTACTGTTTCTGGTTCCTCTAGTTTTGATATCAATCAGTCTGTCGTTGGAAACATTGTTACTGGTGGAAACACAAACAATCATTGCTCTTACTACTTAGAACAATCTAGGAACAGAAATTCAGTATTACCCACTTCTCGTATTTCTGCACCTGGAGGGACAATGGCTGGCCCTAGTAGATATAATCACAGGCAATTTCCTGACAGAACTTCAGGCAACTGTAATTTTGGCCTTTCTGCTTCTGCTTTCAAGGATTCTTCACCATTTGTAACCGGGCCTGTTGCATTTCCTCAAAATCCAAGGTTGCTAACTCGCAATGGAGGCCTCAGAATCTCTAACAACTCTCAGCCTTTCTTCAATGAGGAGAACACTCGTGTTAGATGGACATCACAGGGTTCAGCAATGTCAGATGTGCCACGCTATTTTAATTCTGTAGGCATGCTTGACGAGCACAGAGATCTGAGGCTAGACATAGACGACATGAGCTATGAGGAGCTTCTTGCTTTGGAGGAGAGGATTGGATATGTTTATACTGGCTTGTCAGAGGAGCATCTTTCTATATGCTTAACCAAAAGCGTGTACTGCTCAGCGACTGTTCAAAAGGATCAGTATGAAAGTAGTTGCCCAATATGCTTGGAAGACTACAAGGATATGGAAAATCTGGGGATGATGACTTGTCACCATGCTTATCATGCCATGTGCATCAAGGACTGGTTAAGGATAAAGAATTTCTGTCCGATCTGCAAAGCTCCAGCGGTGGACGACGATTCTCTGAAGAAGCAGAACTGACTATGAATAAGAAATAGGTGCATCAGTAATGGCTTATTATTGTTATGATTATTAGTAGACTGCTTTATTTGTCTTCTCAAAAATCTATCAAAAAGCTGTAAATAGTAACTGTGGCACGATTGAATATATATTTATACATTGCATGAAATTTGGTGTAGATATTTGCATTTTTTGTTGCTTATTTTATTGTGTAGATGTAAATGATTCTTCATTGAACTCTTTGCTTCTGTAAATGGATCATTTAGGTGCAGGCTATGTTTTGCAAAATATGAATAACTTGTGCATCTAAATATGAAACATGAGCTATTATTCAAGAAAGGTCTCTTTTGTAAGAAGGATTTAGGCAAAATAAAGGATTTCTTCATGTTTGCTTTTCCAATCGAG

Network for GWHGAAEX013219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	394	436	1.00E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.670
SRP064423	SRR2545915	Juvenile tuber	23.290
SRP108465	SRR5643513	five period of Gastrodia elata	20.510
	SRR5643514	five period of Gastrodia elata	23.500
	SRR5643515	five period of Gastrodia elata	19.450
	SRR5643524	five period of Gastrodia elata	21.540
	SRR5643525	five period of Gastrodia elata	22.710
	SRR5643528	five period of Gastrodia elata	25.640
	SRR5643658	five period of Gastrodia elata	27.110
	SRR5643659	five period of Gastrodia elata	13.930
	SRR5643660	five period of Gastrodia elata	14.520
	SRR5643661	five period of Gastrodia elata	13.120
	SRR5643662	five period of Gastrodia elata	13.980
	SRR5643663	five period of Gastrodia elata	14.040
	SRR5643664	five period of Gastrodia elata	15.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.300
SRP279888	Gastro	Gastrodia elata tuber	30.88
	Juven	Juvenile tuber	30.24
	Mother_Gastro	Mother tuber of Gastrodia elata	53.96
	Mother_Juven	Mother tuber of Juvenile	43.52