Detail information of GWHGAAEX013220/evm.TU.scaffold_5.142


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17213.00E-100FOG: Zn-finger
nrgi|514787958|ref|XP_004971461.1|1.78E-108PREDICTED: zinc finger protein NUTCRACKER-like [Setaria italica]
Swissprottr|Q9LVQ7|IDD1_ARATH9.00E-101Protein indeterminate-domain 1 {ECO:0000303|PubMed:16784536}
trEMBLtr|M0U637|M0U637_MUSAM2.00E-107Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP03750_001}
TAIRAT5G667303.00E-100C2H2-like zinc finger protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001626122522613841-
Transcript Sequence

Network for GWHGAAEX013220

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12171.7zf-C2H2_jaz65877.50E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms70.410
SRR2545915Juvenile tuber41.720
SRP108465SRR5643513five period of Gastrodia elata88.970
SRR5643514five period of Gastrodia elata97.580
SRR5643515five period of Gastrodia elata62.680
SRR5643524five period of Gastrodia elata102.240
SRR5643525five period of Gastrodia elata47.290
SRR5643528five period of Gastrodia elata22.860
SRR5643658five period of Gastrodia elata53.670
SRR5643659five period of Gastrodia elata46.810
SRR5643660five period of Gastrodia elata57.500
SRR5643661five period of Gastrodia elata43.030
SRR5643662five period of Gastrodia elata39.720
SRR5643663five period of Gastrodia elata30.190
SRR5643664five period of Gastrodia elata59.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1138.790
SRR6049655Rhizomagastrodiae_C368-T10_good_186.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1124.190
SRR6049657Rhizomagastrodiae_C368-T07_good_1164.490
SRR6049658Rhizomagastrodiae_C368-T04_good_1228.190
SRR6049659Rhizomagastrodiae_C368-T04_good_1235.030
SRR6049660Rhizomagastrodiae_C368-T01_good_1148.320
SRR6049661Rhizomagastrodiae_C368-T04_good_1167.570
SRR6049662Rhizomagastrodiae_C368-T01_good_199.690
SRR6049663Rhizomagastrodiae_C368-T01_good_1135.790
SRR6049664Rhizomagastrodiae_C368-T10_good_199.440
SRR6049665Rhizomagastrodiae_C368-T10_good_199.440
SRP279888GastroGastrodia elata tuber 65.39
JuvenJuvenile tuber99.21
Mother_GastroMother tuber of Gastrodia elata 91.60
Mother_JuvenMother tuber of Juvenile 68.15