Gene detail

Detail information of GWHGAAEX013222/evm.TU.scaffold_5.144

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1895	mRNA cleavage and polyadenylation factor II complex, subunit PTA1
nr	gi\|743781338\|ref\|XP_010920861.1\|	PREDICTED: uncharacterized protein LOC105044609 [Elaeis guineensis]
trEMBL	tr\|M5W7B1\|M5W7B1_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09589.1}
TAIR	AT5G01400	HEAT repeat-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	2699926	2779744	+

Transcript Sequence
>GWHTAAEX013222 CTTCTCTCTGGTAGGAGCAAGGGTTTTGGGGGATGTTCGGGATGATTCAGTCGAGATGGGCTGACAGAGCAGCGGGCCTGCTGACCTCAGCCAAATCCCCAGGCAATGTTGCGTCAAAGCTAAAGCACTTGCAGCAGTTAAGGGAGGTGCTCCTCATCAGGGACTCTTCGCTGCTGCCGGATTTTGCGCTGCAGCTGATCGAATTGGACTCAAATCTGCCGAGTGCTGCCCGCAAACTTCTTTCTGAGATACTTGGTGAAATTGGAAAGAAGCATGTGGAGCTCTTACCTGAAATTATTCCCAGTTTAATAGCATTCTTAAAGGATGAATCACCACCAGTTGCTCGGCAAGCTATTGTGACCGGAACTTCTTTATTCAACAATACTCTTGTGAAGGTTTCAATTCAGGGTTTAAATTCTGGTGAAGTAAAAGAAACCCTGAAGTCATCCTGGGCTTCAATGCTGAAATTTAAAAACGCAGTACTTCCACTAGCAATCCAGCCTGGGGTTGATGGTGTAAGACTTTTAGCTGTAAAGTTTATTGAGGCAATGATTCTACTCTATACACCCGATCCAACTTTGCCTTCAGAGCCCCCTCAAGAATTTGATGGGATTCAGTTCAGCATTTCATGGTTAAAGGGAGGCCACCCTCTTCTTAATATTGGGGATTTGGCCATTGAAGCTGGTCAAAATTTGAGACTTTTGCTTGATCAACTAAAGTTTCCACAAGTGAAGTTCCTTGGCAACTCATTAGTTATTGTTCTGATTAACAGTCTCTCAGCTATTGCAAAGAAGAGGCCTTCTTTTTATGGTCACATACTACCAGTTCTTCTTTCTATGGATCCTGAGATGGCCGTTGTTAGAGGAGTTCAAGTTCCTGGGGCTTACCATGCTTTGAAGAATGCCTATATGGCATGTTTGAAATGCACACATTCAAGTGCTGCACCGTGGCGTGCTCGCTTGGTTGATGCTATGGAAATCTTGAACAGTGAAGATCATGGGGAGTGCCAAATCAAGCTTGAGAAAAATCCTGAAACTCCAGCTACTGGTATGGGTGGTTCTTCATCTAATAAGGAAGATCCATCTTTTTTGCAATCATCTGATGAGGTTCATAGTGATCTGGGACGTAAAAGATCTTTAGATGAAGAGTTACTAGATGCATCAGCAGATGATGCCATATCTGAGAAGCGAATTAGAAAGTCACCCATGGTTAAAGATTCTGTTCAAACGGGAGTTGTACCAGCTAAGAATGAGCCTCCTTGTGATTCTGTAACTTTGACTAGGGATGGGGAATCTGGCCCAGTACTTCAGCTTGTTGGAATGTTTGGTGCGTTGGTTGCCCAGGGGAAAAAAGCTTCTGAACCCTTGGAGATTCTTATTTCAAGCATCTCTTCTGACTTACTAGCAGAAGTTGTCTTGACTAATATGCGCTATCTTCCCACTTGTAGTCCCATGTCAGATGATGAGGATGAGTTAAGCCACCACAAGAGTAGCACATCTGGTTTGCAGCCTTCAGTTTCTGCTTCAAATGCTTTCTCATTGTCAAGTGCTTTTTCTATAGTCAAATCTCAGTTAAATTCACAACAGATGTCTCAGAATATGAATTCAATTCACATAAAGCAGGAAGTGGACGTTCAAAATAAGGAGGAAAACACAGTTAGTAGCTCTGGTGCAGAACATTCTTTGGTTATGCCTGATGTGCAGCAGCAGCCTTCTGTCGCAACATCTTTATTTTTAACTGATATAAAAAATGTTGTGCTGCCGTTATATAGGAATGATTCTGAAACAGTAGAGGGTAAAATACCTGGTCTTGATTCACGTACGTGTTTCAATGAAAGTCATGAGTTACCTAATACATCCCATTCATTTGATGAAATTAAGGAACCAACACTAGAGCCTGCTGTAAGTTTGGGTGTTACAGTATCGGTTGATATTTCTCCATCCACTTCGACGGTTAGTTATTCTATGGAAATCCTAAGCCCTAGGGCCACTATCACAGACGCAAATGAGGGGCCTTCCGCTATCACAGATACAAATGAGGGACCTTCCACTGCGTCCCATGTCTCCACTTCTCATTTTTTTCTTCCAAAGATGGTAATATGTAATGCAAACCTAACTGATGAGCAAAAGGATCAGCTGCAAAAAGAGGCATTTATACGCATCCTTCAAGCATACAAACAAGTAGCATTTTCGGGGGCATCAAGTGCTCATTTATCTTTATTGGCTCATCTAGGAACTGAGGTTTCCTTAGACTTAGATCCTTGGGGACTTATTCAAAAGCATGTCCTGTCAGATTATGTGAATCAAGAGGGACACGAGTTGACATTACGTGTACTATACAGGCTGTATCGAGAAGTTGAACAGGATAATGATTTTCTTTCATCCAGGACAGCTATGTCAGTTTACGAAACATTTCTTCTGCATGTGGCTGAAGCTTTACGGGATTCTTTCCCAGCATCAGATAAATCTCTTGGAAAATTGCTTGGGGAAGTACCATACCTATCCGATGGTGTTTTAAAAATGTTAGAGTGCTTGTGCTCTCCTGAGAAAAAAGCAAAGCAAGATATGGATTTTCAAAACGGTGATAGAGTGACTCAAGGTCTAAGTGCTGTTTGGAATCTCATTTTGCTTAGGCCTTCTTGTCGAGATAGATGCCTTCAGATTGTTTTGCAGAGCGCGGTTCACCACTTGGATGAAGTGCGGATGAAGGCAATACGTTTGGTAGCAAATAAGTTGTTTCCAATGTCTAGTATATCTCAAAAGATTGAAGATTTTGCTTCTGATAAGCTTCGTTTAGTGCTACTTAATATTCCTTCCCTGGAAGATACCATTGCCAATGAATCATCTTCTAATCTTCAAAAGGAAAATGACGTGGTAAAGCCCTCTAGCAGAGTACTATCATCTTCCAGTGTTGTGAATATTGAGTTATTATCTGATGGACTTCCAATTAAAAACAGTGCGTCAGCTTCTTTTTCAGAAGCCCAAAGGTGTATGTCTCTTTATTTTGCACTTTGTACTAAGAAACATTCCCTTCTCCGTCAAATTTTTTCCATTTATAAAAGTATTCCTGAGGATGCCATAGAGGCAGTTCATCGCCATATTCCCATATTGGTTAGAACAATAGGATCTTCTCCCGAGCTCCTTGAAATTGTTATGGATCCTCCATCTGGAAGCGAGGTGCTTCTTATGCAGGTATTACAAATTTTAACCGATGGAGCTGTTCCGTCTCAAGAATTGATCTCCTCTGTTAAAAGGTTATATAACTCCAAATTGAAGGATGTTGAAATTCTTATTCCTATAATACCATTTCTCTCAAAAGATGAGATTCTTCCTCTTATGCCTCAGCTTGTCAGTCTTCCAGTGGATAAGTTCCAAGTTGCTCTTACTCGCATACTTCAAATTTCACCTCAGGCTGGTGATTCACTAACCCCTGCTGAAGTACTTATTTCTATTCATGGAATTGATTCTGAGAAAGATGGCGTGCCTTTGAAAAAGATAATCGATGCATGTTCTGCATGCTTTGAACAGCGGCTATTGTTCACTCAACCAGTTTTAGCAAAAGTTTTGAATCAGTTGGTTGAACAGATACCTCTTCCTTTGTTGTTTATGCGCACTGTTATACAAGCAGTTGGCATTTTTCCTGGTTTGATGGATTTTGTAATGGAAATATTATCACGACTTGTGAGCAAGCAGATATGGAAATATCCAAAGCTGTGGGTTGGATTCTTGAAGTGTGCTCTCCAAACAAAGCCTCAGTCTTTCAATGTACTGCTGCAGTTACCAGCAGCACAACTTGAGAATGCCTTAAACAAGAATCCAGTTCTTAAGGCTCCATTGGTTGGTCATGCTAATCAGCCAAACATTAGAGCAACTCTTCCGAGATCAACTCTTGTGGTTTTGGGTCTAGCAAGTGATTCCCAAAGGTCAAGTCAGGTTCAAGTGCAACAGAAGAGTCCAAACCAAGTGACTGACAGTGTTGTTGCTGCTACTGATCCATCTGTTGATGCACCTCAACAATAATCCACACTGCTATTTCGATAGTAAATTCATGTATTTTTTAACATAATTCCTGTACAGGCGAACTAATTAGGAAAAAGGATAAAAAATTATGAAGCCATGAAAATGCAAATTTGTCACAGATGTCGATAAAACTGAAAATGTTATGGTGCTTGTTTTGGAGCTTTTGCTCGTTATCTTCATCTTCTTCCTCCTGAGCGAATGGTTTTGAATGTTTCTTGGAGAAGGAAAGGTATTTTATTGTTATTTTTATTTATTATTATTATTATTGTTGTTGTT

Network for GWHGAAEX013222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11935.7	DUF3453	101	318	9.10E-36
PF12295.7	Symplekin_C	1082	1260	1.00E-63

Protein Sequence

>GWHPAAEX013222
MFGMIQSRWADRAAGLLTSAKSPGNVASKLKHLQQLREVLLIRDSSLLPDFALQLIELDSNLPSAARKLLSEILGEIGKKHVELLPEIIPSLIAFLKDESPPVARQAIVTGTSLFNNTLVKVSIQGLNSGEVKETLKSSWASMLKFKNAVLPLAIQPGVDGVRLLAVKFIEAMILLYTPDPTLPSEPPQEFDGIQFSISWLKGGHPLLNIGDLAIEAGQNLRLLLDQLKFPQVKFLGNSLVIVLINSLSAIAKKRPSFYGHILPVLLSMDPEMAVVRGVQVPGAYHALKNAYMACLKCTHSSAAPWRARLVDAMEILNSEDHGECQIKLEKNPETPATGMGGSSSNKEDPSFLQSSDEVHSDLGRKRSLDEELLDASADDAISEKRIRKSPMVKDSVQTGVVPAKNEPPCDSVTLTRDGESGPVLQLVGMFGALVAQGKKASEPLEILISSISSDLLAEVVLTNMRYLPTCSPMSDDEDELSHHKSSTSGLQPSVSASNAFSLSSAFSIVKSQLNSQQMSQNMNSIHIKQEVDVQNKEENTVSSSGAEHSLVMPDVQQQPSVATSLFLTDIKNVVLPLYRNDSETVEGKIPGLDSRTCFNESHELPNTSHSFDEIKEPTLEPAVSLGVTVSVDISPSTSTVSYSMEILSPRATITDANEGPSAITDTNEGPSTASHVSTSHFFLPKMVICNANLTDEQKDQLQKEAFIRILQAYKQVAFSGASSAHLSLLAHLGTEVSLDLDPWGLIQKHVLSDYVNQEGHELTLRVLYRLYREVEQDNDFLSSRTAMSVYETFLLHVAEALRDSFPASDKSLGKLLGEVPYLSDGVLKMLECLCSPEKKAKQDMDFQNGDRVTQGLSAVWNLILLRPSCRDRCLQIVLQSAVHHLDEVRMKAIRLVANKLFPMSSISQKIEDFASDKLRLVLLNIPSLEDTIANESSSNLQKENDVVKPSSRVLSSSSVVNIELLSDGLPIKNSASASFSEAQRCMSLYFALCTKKHSLLRQIFSIYKSIPEDAIEAVHRHIPILVRTIGSSPELLEIVMDPPSGSEVLLMQVLQILTDGAVPSQELISSVKRLYNSKLKDVEILIPIIPFLSKDEILPLMPQLVSLPVDKFQVALTRILQISPQAGDSLTPAEVLISIHGIDSEKDGVPLKKIIDACSACFEQRLLFTQPVLAKVLNQLVEQIPLPLLFMRTVIQAVGIFPGLMDFVMEILSRLVSKQIWKYPKLWVGFLKCALQTKPQSFNVLLQLPAAQLENALNKNPVLKAPLVGHANQPNIRATLPRSTLVVLGLASDSQRSSQVQVQQKSPNQVTDSVVAATDPSVDAPQQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06100	SYMPK	mRNA surveillance pathway	map03015
K06100	SYMPK	Tight junction	map04530

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.980
SRP064423	SRR2545915	Juvenile tuber	43.650
SRP108465	SRR5643513	five period of Gastrodia elata	14.300
	SRR5643514	five period of Gastrodia elata	13.930
	SRR5643515	five period of Gastrodia elata	13.520
	SRR5643524	five period of Gastrodia elata	13.760
	SRR5643525	five period of Gastrodia elata	13.920
	SRR5643528	five period of Gastrodia elata	15.030
	SRR5643658	five period of Gastrodia elata	16.180
	SRR5643659	five period of Gastrodia elata	17.090
	SRR5643660	five period of Gastrodia elata	17.150
	SRR5643661	five period of Gastrodia elata	13.570
	SRR5643662	five period of Gastrodia elata	15.180
	SRR5643663	five period of Gastrodia elata	18.120
	SRR5643664	five period of Gastrodia elata	18.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.990
SRP279888	Gastro	Gastrodia elata tuber	25.41
	Juven	Juvenile tuber	22.56
	Mother_Gastro	Mother tuber of Gastrodia elata	15.97
	Mother_Juven	Mother tuber of Juvenile	22.28