Detail information of GWHGAAEX013224/evm.TU.scaffold_5.147


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41973.00E-140FOG: PPR repeat
nrgi|672163587|ref|XP_008801648.1|0PREDICTED: pentatricopeptide repeat-containing protein At5g59600 [Phoenix dactylifera]
Swissprottr|Q9FGR2|PP436_ARATH9.00E-141Pentatricopeptide repeat-containing protein At5g59600
trEMBLtr|A0A061H010|A0A061H010_THECC4.00E-170Tetratricopeptide repeat (TPR)-like superfamily protein, putative {ECO:0000313|EMBL:EOY33969.1}
trEMBLtr|A0A061H010|A0A061H010_THECC1.00E-10Tetratricopeptide repeat (TPR)-like superfamily protein, putative {ECO:0000313|EMBL:EOY33969.1}
TAIRAT5G596003.00E-140Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001627934302794923+
Transcript Sequence

Network for GWHGAAEX013224

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR9373.50E-05
PF01535.19PPR811060.0006
PF01535.19PPR1091371.80E-07
PF13041.5PPR_21401862.80E-10
PF01535.19PPR2522750.0011
PF13041.5PPR_22783269.20E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.650
SRR2545915Juvenile tuber1.310
SRP108465SRR5643513five period of Gastrodia elata5.730
SRR5643514five period of Gastrodia elata8.470
SRR5643515five period of Gastrodia elata7.550
SRR5643524five period of Gastrodia elata12.960
SRR5643525five period of Gastrodia elata5.440
SRR5643528five period of Gastrodia elata2.000
SRR5643658five period of Gastrodia elata1.420
SRR5643659five period of Gastrodia elata1.980
SRR5643660five period of Gastrodia elata2.110
SRR5643661five period of Gastrodia elata3.890
SRR5643662five period of Gastrodia elata3.230
SRR5643663five period of Gastrodia elata2.290
SRR5643664five period of Gastrodia elata1.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.030
SRR6049655Rhizomagastrodiae_C368-T10_good_14.370
SRR6049656Rhizomagastrodiae_C368-T07_good_16.520
SRR6049657Rhizomagastrodiae_C368-T07_good_14.630
SRR6049658Rhizomagastrodiae_C368-T04_good_17.760
SRR6049659Rhizomagastrodiae_C368-T04_good_19.370
SRR6049660Rhizomagastrodiae_C368-T01_good_15.750
SRR6049661Rhizomagastrodiae_C368-T04_good_18.610
SRR6049662Rhizomagastrodiae_C368-T01_good_18.680
SRR6049663Rhizomagastrodiae_C368-T01_good_18.370
SRR6049664Rhizomagastrodiae_C368-T10_good_14.840
SRR6049665Rhizomagastrodiae_C368-T10_good_14.840
SRP279888GastroGastrodia elata tuber 3.29
JuvenJuvenile tuber6.37
Mother_GastroMother tuber of Gastrodia elata 11.16
Mother_JuvenMother tuber of Juvenile 8.48