Detail information of GWHGAAEX013228/evm.TU.scaffold_5.151
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672142366|ref|XP_008795043.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g16010 [Phoenix dactylifera] |
| Swissprot | tr|Q9LW84|PP236_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g16010 |
| trEMBL | tr|M0SBG1|M0SBG1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03430_001} |
| TAIR | AT3G16010 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2849728 | 2855651 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013228
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 194 | 223 | 0.68 |
| PF01535.19 | PPR | 264 | 292 | 0.00053 |
| PF12854.6 | PPR_1 | 293 | 325 | 7.90E-13 |
| PF13041.5 | PPR_2 | 335 | 380 | 7.50E-12 |
| PF01535.19 | PPR | 405 | 434 | 0.0028 |
| PF13041.5 | PPR_2 | 436 | 486 | 1.80E-17 |
| PF01535.19 | PPR | 511 | 538 | 0.0015 |
| PF01535.19 | PPR | 546 | 575 | 6.50E-06 |
| PF13041.5 | PPR_2 | 580 | 626 | 1.80E-14 |
| PF13041.5 | PPR_2 | 647 | 693 | 6.40E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.300 |
| SRR2545915 | Juvenile tuber | 28.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.260 |
| SRR5643514 | five period of Gastrodia elata | 31.220 | |
| SRR5643515 | five period of Gastrodia elata | 30.400 | |
| SRR5643524 | five period of Gastrodia elata | 27.250 | |
| SRR5643525 | five period of Gastrodia elata | 49.290 | |
| SRR5643528 | five period of Gastrodia elata | 34.310 | |
| SRR5643658 | five period of Gastrodia elata | 43.850 | |
| SRR5643659 | five period of Gastrodia elata | 42.990 | |
| SRR5643660 | five period of Gastrodia elata | 46.690 | |
| SRR5643661 | five period of Gastrodia elata | 39.230 | |
| SRR5643662 | five period of Gastrodia elata | 36.140 | |
| SRR5643663 | five period of Gastrodia elata | 47.860 | |
| SRR5643664 | five period of Gastrodia elata | 37.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 48.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 47.66 |
| Juven | Juvenile tuber | 42.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.97 | |
| Mother_Juven | Mother tuber of Juvenile | 43.80 |