Detail information of GWHGAAEX013229/evm.TU.scaffold_5.152
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320159746|ref|YP_004172970.1| | 7.00E-80 | prephenate dehydratase [Anaerolinea thermophila UNI-1] |
| KOG | KOG2797 | 4.00E-156 | Prephenate dehydratase |
| nr | gi|672109849|ref|XP_008792316.1| | 0 | PREDICTED: arogenate dehydratase/prephenate dehydratase 2, chloroplastic isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SSE7|AROD2_ARATH | 1.00E-156 | Arogenate dehydratase/prephenate dehydratase 2, chloroplastic (Precursor) |
| trEMBL | tr|M0RHV4|M0RHV4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P13280_001} |
| TAIR | AT3G07630 | 4.00E-156 | arogenate dehydratase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 2859068 | 2868660 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013229
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00800.17 | PDT | 101 | 277 | 2.80E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009094 | Biological Process | L-phenylalanine biosynthetic process |
| GO:0004664 | Molecular Function | prephenate dehydratase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.880 |
| SRR2545915 | Juvenile tuber | 24.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.230 |
| SRR5643514 | five period of Gastrodia elata | 16.300 | |
| SRR5643515 | five period of Gastrodia elata | 18.100 | |
| SRR5643524 | five period of Gastrodia elata | 15.210 | |
| SRR5643525 | five period of Gastrodia elata | 22.710 | |
| SRR5643528 | five period of Gastrodia elata | 26.780 | |
| SRR5643658 | five period of Gastrodia elata | 25.020 | |
| SRR5643659 | five period of Gastrodia elata | 19.060 | |
| SRR5643660 | five period of Gastrodia elata | 18.510 | |
| SRR5643661 | five period of Gastrodia elata | 19.040 | |
| SRR5643662 | five period of Gastrodia elata | 21.160 | |
| SRR5643663 | five period of Gastrodia elata | 19.230 | |
| SRR5643664 | five period of Gastrodia elata | 17.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.700 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.450 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.47 |
| Juven | Juvenile tuber | 21.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.31 | |
| Mother_Juven | Mother tuber of Juvenile | 12.33 |