Detail information of GWHGAAEX013232/evm.TU.scaffold_5.155


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780512|ref|YP_008432319.1|7.00E-74DNA topoisomerase VI subunit A [Thermofilum sp. 1910b]
KOGKOG27950Catalytic subunit of the meiotic double strand break transesterase
nrgi|743842334|ref|XP_010937777.1|0PREDICTED: DNA topoisomerase 6 subunit A3 [Elaeis guineensis]
Swissprottr|Q9LZ03|TOP6A_ARATH0DNA topoisomerase 6 subunit A {ECO:0000255|HAMAP-Rule:MF_03164}
trEMBLtr|F6HQV1|F6HQV1_VITVI0DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_03164}
TAIRAT5G028200Spo11/DNA topoisomerase VI, subunit A protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001629619062964095-
Transcript Sequence

Network for GWHGAAEX013232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04406.13TP6A_N1371981.10E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10878SPO11 Meiosis - yeast map04113

Gene Ontology

GO term OntologyName
GO:0006265Biological ProcessDNA topological change
GO:0000737Biological ProcessDNA catabolic process, endonucleolytic
GO:0006259Biological ProcessDNA metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0005524Molecular FunctionATP binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003677Molecular FunctionDNA binding
GO:0016889Molecular Functionendodeoxyribonuclease activity, producing 3'-phosphomonoesters
GO:0005694Cellular Componentchromosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.520
SRR2545915Juvenile tuber9.560
SRP108465SRR5643513five period of Gastrodia elata19.780
SRR5643514five period of Gastrodia elata21.740
SRR5643515five period of Gastrodia elata19.780
SRR5643524five period of Gastrodia elata21.320
SRR5643525five period of Gastrodia elata21.070
SRR5643528five period of Gastrodia elata18.870
SRR5643658five period of Gastrodia elata16.390
SRR5643659five period of Gastrodia elata32.060
SRR5643660five period of Gastrodia elata28.710
SRR5643661five period of Gastrodia elata34.530
SRR5643662five period of Gastrodia elata26.810
SRR5643663five period of Gastrodia elata24.190
SRR5643664five period of Gastrodia elata24.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.200
SRR6049655Rhizomagastrodiae_C368-T10_good_134.450
SRR6049656Rhizomagastrodiae_C368-T07_good_127.770
SRR6049657Rhizomagastrodiae_C368-T07_good_120.390
SRR6049658Rhizomagastrodiae_C368-T04_good_123.440
SRR6049659Rhizomagastrodiae_C368-T04_good_121.300
SRR6049660Rhizomagastrodiae_C368-T01_good_124.230
SRR6049661Rhizomagastrodiae_C368-T04_good_125.080
SRR6049662Rhizomagastrodiae_C368-T01_good_137.830
SRR6049663Rhizomagastrodiae_C368-T01_good_130.220
SRR6049664Rhizomagastrodiae_C368-T10_good_133.750
SRR6049665Rhizomagastrodiae_C368-T10_good_133.750
SRP279888GastroGastrodia elata tuber 25.73
JuvenJuvenile tuber25.44
Mother_GastroMother tuber of Gastrodia elata 19.44
Mother_JuvenMother tuber of Juvenile 20.35