Gene detail

Detail information of GWHGAAEX013237/evm.TU.scaffold_5.160

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338212839\|ref\|YP_004656894.1\|	1.00E-13	response regulator receiver protein [Runella slithyformis DSM 19594]
KOG	KOG1601	1.00E-117	GATA-4/5/6 transcription factors
nr	gi\|743781742\|ref\|XP_010920961.1\|	0	PREDICTED: two-component response regulator-like PRR37 isoform X2 [Elaeis guineensis]
Swissprot	tr\|A2XFB7\|PRR73_ORYSI	2.00E-170	Two-component response regulator-like PRR73
trEMBL	tr\|M0U7Z0\|M0U7Z0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP10310_001}
TAIR	AT5G02810	1.00E-117	pseudo-response regulator 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	3042903	3061981	+

Transcript Sequence
>GWHTAAEX013237 ATGGGAGGTGCACGCCTAAAGGTGAGTGTTATAGAAGGGGCAGCCAGCAAGGGGATGTTGGAATTCATTCCTGATAGCAGGAATGAGCACAAGGCACTAAGGGATCGCATAACGGGAGAGGGGCAAGGGATGTCTGATGAAGATAAGTCTAGAATTAATGATCCTTTGCTGGAGGTATATGAAGCCCATGTACAAGATGCAGCAACAATTGCTTATAATCCTTTGCTGGAGAAGCAACAGCATCTGTCCTCTTGTCCTATTGTCCGGTGGGACAGATTTCTTCCTTTGAGAAGTCTCAAAGTCTTGCTGGTGGAGAATGATGATTCCACTAGACAAGTGGTAAGCGCTTTGCTCCGGAACTGTTGTTATGAAGTTACTGCTGCTGAAAATGGCCTGGAAGCTTGGAAAGTATTAGAAGATGGTATGAATCATATTGATCTAGTTTTAACTGAGGTAGTTATACCTTGCTTGTCTGGAATTGGTCTTTTATGCAAGATCATGAGTCATAAAACTTGCAAGACTATTCCTGTTATTATGATGTCATCCAATGATTCCATGGGTATAGTATTTCAATGCTTGTCAAAAGGTGCTGTTGACTTTTTGGTTAAACCAATTCGTAAGAATGAGCTTAAGAATCTTTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTTGTGGAAGTGGAAGCGAAAGTGGCATACAAGGCAAAAAATTTGCTAAATCGAAGAGTGAGGATGAGTCTAATAACAACACTGGTAGTAATGACGAGGACAATGGTAGTGTTGGCTTGAATGCTCGGGATGGGAGTGATAATGGAAGCCGTACTCAGAGTTCCTGGACTAAATGTGCAGTTGAAGTTGATAGCCCACAACCAATGTCTCCATGTGAACAATTAGCCATCCCGCATGACAACAGCACATGCGCACAAGTTATTCATACTTTGGCTGAAACCTTCTGCAGCAATAACGTACAGCAAGTGACTGCTGGTGCAAACCAAAAAAAACAGAAGAAATTTTCCGATGATATCATGAGAGAAAACTTGGAGGCAGGGTGTGCGTTAAGGAACACTGATGTTACGAATGAATTGCACCAAACAGATAAAGTTCTTGCGAAACAGGCCAATGCAAGCAGGGAGAAATTGCCTGAGAATCGACCAAACAACATTGATCCTGTTCATCATGCAAACCCCAATGTGCTTCCCAAACAAATCTCCCAGGCTTCTTCTGATCATCATGGTGGAAACTCCATCAACCCTTACCAACTATCAGTTTCAGCACTTCCCAATGCCCCCCCGAATTCCACAAAAATATCAGAAAACAAGGATAATGGATATGTAGAGTCACCATCATCTCTTGAACTTAGCCTCAAGAGATTGAGATCAGCGAGAGAAAGAGATGAAAGAAATGTTTTGAAACGCTCAAATCTATCGGCATTCTCGAGGTATCCTGTCTCAGGAGCTTCAGTTCCAGCCTCTACTGGAATTGCAGGAAGCTTGGTGCTTGAGAGCAGCAGTTCTGAGGCAGCTCCACTGAATCAAGGTTCTAATGGCGGCAGTAGCAACAATGATAAGGGTTCTATTAACATAAATGTCATTACGAAACCAGGAATATGCAGCCATCCTGCCTCAGCATTTCATCCTGTTCATTCACAAAATTCAATCATTCAGCCGGTCATTCCAGAGAAGATTGATGAAGTAGCTGCAATTCCAGCTACTGAGCATTCAATGGGATTTGAAAAACAAGTGCAAGTGCAGCATCATCATCATCATTATTATCACCACCATCATCATCATGTCCATGCACTCCCGCCCCAACCGGATCTTGATGAATCGTCTCTAGAGAATAAAAAAGCAACTGTTGCCTACTGCAGCTCATCTAATGTGTTCAACCGGCCGGTGGAAGCTAATGCTGTTAACTATAGCATAAATGGTAGTAATTCGGGCAGCAACCATGGTAGTGATGGGCAGAATGGAGGAACTAACTTAGAGGGCAGCACCATAGGATTGACTGAGAAGAGCAGTGTCGGAAGCGGCAATGGTGGCGAGAACGGAACAGATCAAACTCGCTTTTCTCAGAGAGAGGCCGCCTTGAACAAGTTCAGGCAGAAGAGAAAAGAACGAAACTTTGGCAAAAAGGTACGATACCAGAGCCGGAAGAGACTGGCGGAGCAGCGGCCACGCGTCCGAGGTCAATTCGTACGGCGGATCGTCTACAATGAAAATCAAGAACCGTACAGCTGA

Network for GWHGAAEX013237

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.23	Response_reg	101	212	4.00E-19
PF06203.13	CCT	692	733	1.40E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12129	PRR7	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	86.340
SRP064423	SRR2545915	Juvenile tuber	46.420
SRP108465	SRR5643513	five period of Gastrodia elata	30.220
	SRR5643514	five period of Gastrodia elata	29.510
	SRR5643515	five period of Gastrodia elata	33.240
	SRR5643524	five period of Gastrodia elata	28.750
	SRR5643525	five period of Gastrodia elata	73.100
	SRR5643528	five period of Gastrodia elata	62.480
	SRR5643658	five period of Gastrodia elata	65.610
	SRR5643659	five period of Gastrodia elata	50.570
	SRR5643660	five period of Gastrodia elata	50.050
	SRR5643661	five period of Gastrodia elata	47.050
	SRR5643662	five period of Gastrodia elata	53.970
	SRR5643663	five period of Gastrodia elata	48.040
	SRR5643664	five period of Gastrodia elata	60.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	50.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.570
SRP279888	Gastro	Gastrodia elata tuber	49.83
	Juven	Juvenile tuber	51.69
	Mother_Gastro	Mother tuber of Gastrodia elata	61.35
	Mother_Juven	Mother tuber of Juvenile	55.73