Detail information of GWHGAAEX013238/evm.TU.scaffold_5.161


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG47236.00E-72Uncharacterized conserved protein
nrgi|743781746|ref|XP_010920964.1|2.20E-114PREDICTED: elongator complex protein 6 [Elaeis guineensis]
Swissprottr|Q8L9Y2|ELP6_ARATH6.00E-85Elongator complex protein 6
trEMBLtr|M0REZ9|M0REZ9_MUSAM1.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P03220_001}
TAIRAT4G100906.00E-72elongator protein 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001630631903077090-
Transcript Sequence

Network for GWHGAAEX013238

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09807.8ELP6232492.90E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0002098Biological ProcesstRNA wobble uridine modification
GO:0033588Cellular ComponentElongator holoenzyme complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.540
SRR2545915Juvenile tuber20.220
SRP108465SRR5643513five period of Gastrodia elata15.980
SRR5643514five period of Gastrodia elata25.430
SRR5643515five period of Gastrodia elata23.420
SRR5643524five period of Gastrodia elata23.850
SRR5643525five period of Gastrodia elata20.460
SRR5643528five period of Gastrodia elata23.930
SRR5643658five period of Gastrodia elata25.030
SRR5643659five period of Gastrodia elata14.720
SRR5643660five period of Gastrodia elata15.020
SRR5643661five period of Gastrodia elata11.260
SRR5643662five period of Gastrodia elata13.630
SRR5643663five period of Gastrodia elata12.560
SRR5643664five period of Gastrodia elata10.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.050
SRR6049655Rhizomagastrodiae_C368-T10_good_133.030
SRR6049656Rhizomagastrodiae_C368-T07_good_123.670
SRR6049657Rhizomagastrodiae_C368-T07_good_119.510
SRR6049658Rhizomagastrodiae_C368-T04_good_117.290
SRR6049659Rhizomagastrodiae_C368-T04_good_115.550
SRR6049660Rhizomagastrodiae_C368-T01_good_119.010
SRR6049661Rhizomagastrodiae_C368-T04_good_121.140
SRR6049662Rhizomagastrodiae_C368-T01_good_125.510
SRR6049663Rhizomagastrodiae_C368-T01_good_120.060
SRR6049664Rhizomagastrodiae_C368-T10_good_128.410
SRR6049665Rhizomagastrodiae_C368-T10_good_128.410
SRP279888GastroGastrodia elata tuber 18.59
JuvenJuvenile tuber13.14
Mother_GastroMother tuber of Gastrodia elata 24.89
Mother_JuvenMother tuber of Juvenile 14.83