Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG4197	2.00E-105	FOG: PPR repeat
nr	gi\|743799819\|ref\|XP_010925611.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Elaeis guineensis]
Swissprot	tr\|Q9LFL5\|PP390_ARATH	6.00E-106	Pentatricopeptide repeat-containing protein At5g16860
trEMBL	tr\|W1NR80\|W1NR80_AMBTC	3.00E-172	Uncharacterized protein {ECO:0000313\|EMBL:ERM98332.1}
trEMBL	tr\|W1NR80\|W1NR80_AMBTC	6.00E-42	Uncharacterized protein {ECO:0000313\|EMBL:ERM98332.1}
trEMBL	tr\|W1NR80\|W1NR80_AMBTC	1.00E-33	Uncharacterized protein {ECO:0000313\|EMBL:ERM98332.1}
trEMBL	tr\|W1NR80\|W1NR80_AMBTC	4.00E-09	Uncharacterized protein {ECO:0000313\|EMBL:ERM98332.1}
TAIR	AT5G16860	2.00E-105	Tetratricopeptide repeat (TPR)-like superfamily protein

Scaffold	Start	End	Strand
GWHAAEX00000016	3175951	3177348	-

Transcript Sequence
>GWHTAAEX013243 ATGACTGAGAGAGCCCGGACGATTTTCAATTGTATGGCTTGGAAGGATACAGTCACCTGGAATGCCTTGATTGCTTCTTATGCTCAGAATGGTTTCTTCAAAGAGAGCTTGGAGCTTCTCAGGGAGATGAAGGTTTGCGGATTGGATTTGGATGTTGTTACTTACAGTGGCATAATCTCTTCCTTAGCACAAGCAAATATGTCCAAAGAAGCAATGGTAGTGTTTGGTGAGTTGTTGAATGATGGCTTAAAGCCTGATGTTGTTGCTATGACAAGCATTCTTCCTTCGATTTCTGGCATATTCTGCTTAGATTACTGCAAAGAAATCCATGGATACTCAATCAGGCATGGCATTGAGCCAGACCGAAGGGTTCGAAACGCTCTTGTTTCGGTCTACGGCAAATGTGGTTCAGTTCAGTACGCCGAACAAGTATTTGAAAGTATAACAAACAGAGATGTCATATCTTGGAGTTCAATGGTTGTGGGCTACTCACAAAACCACTACTTAGTAGATTCACTGAAAGTATTTAGGAAGATGATTTCTCATGAAATAGGGCCGAATCCAGTTACAGTCACAGGTGCATTGTCTGCTTGTGGTGGTCTTTCTCAATTGAGGCTTGGAAAGGAGCTCCATCTATGGGCAATAAAGAATTCATTTGAAGGACAAGCTTTTGTGGGGAGTGCTTTAATAGATATGTATGCTAAATCAGGTAGAATCATAAACTTTAGGACAGTGTTTGACTTAATGGAAGACAAGAACTTAGTCAGTTGGAACTCGATGATTGGAGGCTATGCAATCAATGGGCTTGCTTACAAAGCTATCGAAGTCTTCCAAATGGTCACAAACCCGGATGATGTAAGCTTTATTGCAGTGCTCTCTGCATGCAGTCATGGAGGACTTGTTGAGGAAGGGATAGCAATTTTTAGCAAAATGTGGGAATTTCAAGTGACTCCAAGAGAAAGCCATTATGCATGTATGGTTGACTTATTAGCACGTTCTGGAAGAGTGGAGCAAGCTCTTGAGTTAGTAAGGACAATGCCGTCCAAAGCCAGTGCTGAAATCTGGGGAGTTTTGCTTGGGGCTTGCAAGATGCACTCTAATTTAGAGATAGGAGTCTACACTGGTGAGAGGATAATCGAATTTGGGAGTGAAAATTCTGGGTATTATGTACTGCTTTCGAATGTGTTGGCAAATTTTGGAAGGTGGGAAGCTGTGGAGGAGATGAGAAGGAGAATGAAGGTAATGGGAGTGAGGAAAAGTAGAGGGTGTAGCTGGATAGAAGTTAACAAAATAGTGCATTCTTTTGTGGCAAAGGACTACAGACAGCATCCAGAGTGGGAATGTTTGTTCAGGGTTCTAAACTTTTTGAGTGAGCAAATAAAAGGACCGTATTGTTAG

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	15	63	6.30E-12
PF01535.19	PPR	126	151	0.085
PF01535.19	PPR	154	182	0.0012
PF01535.19	PPR	227	253	0.16
PF01535.19	PPR	255	278	4.20E-05
PF01535.19	PPR	286	314	0.012
PF01535.19	PPR	322	348	0.031

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.290
SRP064423	SRR2545915	Juvenile tuber	1.550
SRP108465	SRR5643513	five period of Gastrodia elata	1.430
	SRR5643514	five period of Gastrodia elata	2.230
	SRR5643515	five period of Gastrodia elata	1.280
	SRR5643524	five period of Gastrodia elata	1.580
	SRR5643525	five period of Gastrodia elata	1.270
	SRR5643528	five period of Gastrodia elata	0.900
	SRR5643658	five period of Gastrodia elata	0.450
	SRR5643659	five period of Gastrodia elata	1.360
	SRR5643660	five period of Gastrodia elata	1.220
	SRR5643661	five period of Gastrodia elata	1.670
	SRR5643662	five period of Gastrodia elata	1.430
	SRR5643663	five period of Gastrodia elata	1.500
	SRR5643664	five period of Gastrodia elata	1.130
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.570
SRP279888	Gastro	Gastrodia elata tuber	1.98
	Juven	Juvenile tuber	2.37
	Mother_Gastro	Mother tuber of Gastrodia elata	1.09
	Mother_Juven	Mother tuber of Juvenile	1.43