Detail information of GWHGAAEX013246/evm.TU.scaffold_5.170
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502738|ref|YP_001958455.1| | 4.00E-25 | hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|695058793|ref|XP_009417723.1| | 0 | PREDICTED: E3 ubiquitin-protein ligase KEG [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FY48|KEG_ARATH | 0 | E3 ubiquitin-protein ligase KEG |
| trEMBL | tr|A0A067L7R5|A0A067L7R5_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP40550.1} |
| TAIR | AT5G13540 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3254254 | 3306635 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013246
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14634.5 | zf-RING_5 | 6 | 52 | 1.50E-06 |
| PF00069.24 | Pkinase | 198 | 455 | 4.40E-24 |
| PF12796.6 | Ank_2 | 520 | 605 | 3.30E-11 |
| PF12796.6 | Ank_2 | 617 | 697 | 2.80E-10 |
| PF12796.6 | Ank_2 | 736 | 821 | 5.20E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | TKL-Pl-1 |
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.900 |
| SRR2545915 | Juvenile tuber | 24.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.590 |
| SRR5643514 | five period of Gastrodia elata | 31.410 | |
| SRR5643515 | five period of Gastrodia elata | 31.390 | |
| SRR5643524 | five period of Gastrodia elata | 31.150 | |
| SRR5643525 | five period of Gastrodia elata | 42.070 | |
| SRR5643528 | five period of Gastrodia elata | 35.590 | |
| SRR5643658 | five period of Gastrodia elata | 37.840 | |
| SRR5643659 | five period of Gastrodia elata | 30.920 | |
| SRR5643660 | five period of Gastrodia elata | 31.360 | |
| SRR5643661 | five period of Gastrodia elata | 29.840 | |
| SRR5643662 | five period of Gastrodia elata | 31.480 | |
| SRR5643663 | five period of Gastrodia elata | 29.130 | |
| SRR5643664 | five period of Gastrodia elata | 34.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 28.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.03 |
| Juven | Juvenile tuber | 46.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.26 | |
| Mother_Juven | Mother tuber of Juvenile | 61.97 |