Detail information of GWHGAAEX013248/evm.TU.scaffold_5.172


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|431799186|ref|YP_007226090.1|0beta-galactosidase/beta-glucuronidase [Echinicola vietnamensis DSM 17526]
KOGKOG22300Predicted beta-mannosidase
nrgi|672165483|ref|XP_008802646.1|0PREDICTED: mannosylglycoprotein endo-beta-mannosidase isoform X2 [Phoenix dactylifera]
Swissprottr|Q5H7P5|EBM_LILLO0Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit
trEMBLtr|A0A096T5G2|A0A096T5G2_MAIZE0Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G308707_P01}
TAIRAT1G090100glycoside hydrolase family 2 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001633377403369009-
Transcript Sequence

Network for GWHGAAEX013248

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00703.20Glyco_hydro_22083261.30E-11
PF02836.16Glyco_hydro_2_C3404900.00011
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.390
SRR2545915Juvenile tuber22.360
SRP108465SRR5643513five period of Gastrodia elata17.160
SRR5643514five period of Gastrodia elata16.510
SRR5643515five period of Gastrodia elata15.510
SRR5643524five period of Gastrodia elata14.210
SRR5643525five period of Gastrodia elata10.720
SRR5643528five period of Gastrodia elata7.940
SRR5643658five period of Gastrodia elata9.840
SRR5643659five period of Gastrodia elata31.270
SRR5643660five period of Gastrodia elata31.070
SRR5643661five period of Gastrodia elata24.250
SRR5643662five period of Gastrodia elata18.330
SRR5643663five period of Gastrodia elata25.480
SRR5643664five period of Gastrodia elata24.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.530
SRR6049655Rhizomagastrodiae_C368-T10_good_125.190
SRR6049656Rhizomagastrodiae_C368-T07_good_118.610
SRR6049657Rhizomagastrodiae_C368-T07_good_127.800
SRR6049658Rhizomagastrodiae_C368-T04_good_115.450
SRR6049659Rhizomagastrodiae_C368-T04_good_117.470
SRR6049660Rhizomagastrodiae_C368-T01_good_117.200
SRR6049661Rhizomagastrodiae_C368-T04_good_114.110
SRR6049662Rhizomagastrodiae_C368-T01_good_112.070
SRR6049663Rhizomagastrodiae_C368-T01_good_110.170
SRR6049664Rhizomagastrodiae_C368-T10_good_116.110
SRR6049665Rhizomagastrodiae_C368-T10_good_116.110
SRP279888GastroGastrodia elata tuber 26.17
JuvenJuvenile tuber38.22
Mother_GastroMother tuber of Gastrodia elata 8.90
Mother_JuvenMother tuber of Juvenile 15.18