Gene detail

Detail information of GWHGAAEX013250/evm.TU.scaffold_5.175_evm.TU.scaffold_5.174

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383763787\|ref\|YP_005442769.1\|	1.00E-56	hypothetical protein CLDAP_28320 [Caldilinea aerophila DSM 14535 = NBRC 104270]
KOG	KOG0448	6.00E-179	Mitofusin 1 GTPase, involved in mitochondrila biogenesis
nr	gi\|672119846\|ref\|XP_008783174.1\|	0	PREDICTED: uncharacterized protein LOC103702498 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|D7TPB4\|D7TPB4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32337.3}
TAIR	AT1G03160	6.00E-179	FZO-like

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	3381970	3439468	+

Transcript Sequence
>GWHTAAEX013250 CAGCAATACATAAATCCTCATTTTGTTCGTAACACTGAAAAACCTCTTCTATTACAATGGTTTCCATTTCCTGCAGCTGCTACCAGGCAACTATACAACCACTCATCCCTCTCCTCGCAAAAACTCGCCTCCCCGACTTCTTACTTACTCCTCGAATCCATAGACGCCGTCCTGCTTGCGGTCCATTAACCTCCATCAGGGCTGCTCCTTCCAGCCCCAATCCGCCCGGCGGGAAGCGGATTCCGTGGACGCTGGCTTACACTGAGTGCAATCGATCGGGTATAATAATTCCAAGGTTGGTTCTCCGACTGAGCACGGAGGAGGTGCTTCTCTGGGATGATGGCGGCGCAGCGCTCCGCGAAGCTGTGTCGAGGGGAGTGAGGGTTGTAGTTCTCGACGTTGGAGAGAATAGCGGCGGCAATTCTTATGAGGCTGCGTGCCTATTGAAGTCGATAGTTGGTGACAGTGCTTATCTTCTTATTTCCGAGCGCGTGGATGTTGCCGCCGCTGTTGGGGCTTGTGGCGTTGTTCTGTCTGATCAAAGCATTCCTGTTAATGTGGCTAAGAATATGATGTTGAAATCCAAATCTGATGATTTGTTTAACCCCCTTGTGGCTAGAGATGTGCGCAATGCAAATACTGCAAAGTATGCAGCAAGTTTTGCTGGCGTTGATTTTATAATAATTAGTAATGATGATGGAAGTTGGGAAGAGGTACTTAAAGAATCAGTTACTCAAAATGTTATGGTGCCAATTTTCCTAAATATGAAACATTTGGGAGACGTTGTAACTACTGACGTGGCATCAAAATTACTACAGTTAGGAGCATATGGGCTAGTCATGTCTTTAGATTATCTGAAGCTATTCAGTAATGATATTTTGGAGAAGATAGTTTTAGCCAATTATGGTGAAAGCAGATTTACACAAGATCGATGTAAAAATTCTAGCAGTGTGAAAATAGATGCATCTACAAGTACGTTTGATGTGGCCAAGGGGGTCCCTGGATTTGTGAAACCTGCTGAGAGAGAGATAAAGATTATAGAGGCCGAAAGTCTTTTGGTACATGAAGCTCTTGCAGTTATACGCAAGGCTGCACCAATGTTGAGCGAGGTTGCGCTTCTTGTGGTTGCTGTTTCTCGTCTTAAGGAGCCATTTTTGATGGTTATTGCGGGCGAGTTTAATTCTGGAAAATCAACTGTTATAAATGCTCTTCTTGGAAGAAGGTACCTAAAGGAAGGCGTAGTCCCTACAACATCTGAGATAACTCTACTATGCCACTCAAAAATGAGCTTGAACAAACAAGAACAATGTGAAAGAAACACCATTGGACAACTTATATGCTATTTATCTTCTCCTATTCTTGAGAACATGAATATTGTTGATACACCAGGCACAAATGTGATTCTTCAAAAGCAGAAACGTCTTACAGAAGAGTTTGTTCCTCATGCTGATTTGATTCTTTTTGTCATTTCATCGGATCGGCCATTGACTGAAAGCGAGGCTTCTTTTCTTCAATATGTAAGACAGTGGAAGAAAAAAGTTGTTTTTGTTCTAAACAAACTAGATATTTATCAGAACACCCGTGAGCTTGAGGAAGCTACATTATTTATTCAAGAGAACACACAGAAATTTCTCGGCGCAGGAGATGTGATTCTGTATCCTGTATCTGCACGGTCTGCACTCGAAGCAAAGCTTTCGGCTTTGACTTTTGATGCTAAAAACTACAAGAAAATTCTGCGCAATGATCCTTGTTGGATTTCTAGCAAATTTCAGGAGTTGGAGCATTTCTTGTTTGGTTTTCTTGACGGTTCGACCAATACTGGCATGGAACGAATGAAGCTTAAGCTTGAGACGCCGGTTGCAATTGCAGAGCGTCTGTTGAATTCTTCTGAAAGGTTAATTTTGCGGCAGCAGGATGAGGCGTGTCAGGACCTGATTTCTATCAATGAAATTGTTGCTGGAATTAAAGCTTATACCACGGAGATGGAAACTGAAAGCATATCCTGGAAGAAAAGAGCTGTATCTCTGATCAAGATGGCAGAATCTCAAGCCGTAAAGCTCATGGAATTCACTCTCCAACTCTCCAATATCAATCTTGTTTCTTCATATGCTTTCAAAGGAGAAAAATCCAGTCTTATGTCTTCCACCTCAATTTTACAGAACGAAATCATTAATCCATCTCTATCTGATATGCAGGTGTAGTGTTTCTTCTAGCTGGATCTTTGGCGATTGGTGCTTCTTTTTTCATTCTGCATATGCGAGAGAATGTGAACACCATTTTTTTATCAAGGGGCAATTACATGCATAACACTTGAAACTTTTTATTTGCGGAATGAACACCCTTGTATAACCATTTTCAACAAAAATGTACTCATTTTGAAGAGCACAAAAAACCCATCCCGTACTTTTCAATATTGTAAATTACAGTGGTTTGATCCCCACACTACACCGGGTCTTTACTTCGTCCTTTAGAGTGGGTGACCATTTTCTTAATAAGCATGTTTTGGGTGTCATGCATGTGCAGAATTGTATTGTTATAATAGCTATATCGGTATTTTGTATGTTTCTTTGTAGAAATTGCTTAGAGAGTATTCAG

Network for GWHGAAEX013250

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	369	501	4.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.390
SRP064423	SRR2545915	Juvenile tuber	7.400
SRP108465	SRR5643513	five period of Gastrodia elata	5.160
	SRR5643514	five period of Gastrodia elata	6.070
	SRR5643515	five period of Gastrodia elata	5.450
	SRR5643524	five period of Gastrodia elata	5.870
	SRR5643525	five period of Gastrodia elata	4.670
	SRR5643528	five period of Gastrodia elata	2.500
	SRR5643658	five period of Gastrodia elata	4.250
	SRR5643659	five period of Gastrodia elata	5.010
	SRR5643660	five period of Gastrodia elata	5.120
	SRR5643661	five period of Gastrodia elata	5.710
	SRR5643662	five period of Gastrodia elata	6.240
	SRR5643663	five period of Gastrodia elata	6.620
	SRR5643664	five period of Gastrodia elata	5.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.100
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.100
SRP279888	Gastro	Gastrodia elata tuber	6.52
	Juven	Juvenile tuber	8.79
	Mother_Gastro	Mother tuber of Gastrodia elata	4.90
	Mother_Juven	Mother tuber of Juvenile	7.35