Gene detail

Detail information of GWHGAAEX013251/evm.TU.scaffold_5.176

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|166363960\|ref\|YP_001656233.1\|	magnesium chelatase subunit H [Microcystis aeruginosa NIES-843]
nr	gi\|695006282\|ref\|XP_009389626.1\|	PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprot	tr\|B8ANF1\|CHLH_ORYSI	Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBL	tr\|I1LAA1\|I1LAA1_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G20570.1}
TAIR	AT5G13630	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	3445568	3449419	-

Transcript Sequence
>GWHTAAEX013251 ATGTTACGGAAGTCACATGCGCTGCCTAAGAGAGTGGAGAAGCTTTGTGCAAGAGCAATAAAATGGGCAGACCTCAGGAGAAAATCGAAGGAAGAGAAGAAAGTGGCAATCACGGCATTCTGCTTTCCACCGGATAAGGGCAATGTTGGGACTGCGGCGTACCTCAACGTCTTCTCGTCCATATTCTCCGTTGTCGGGGAGCTCAAGAAAGACGGATACCACGTGTCGGATTTCCCCTCTTCCGCAGATTCCCTCCTTCGCGAGATCATCGGCGAGGATCATCCCGCGGGGAGCAGCCCCAGCCTTCGTGTGGCCTACCGAATGCCTGTGCGCGAGTATAAATACCTGACCCCCTTCGCGTCTGCCCTGGAGCCCTCCTGGGGTAAACCCCCGGGAAACCTAAACTCCGATGGTGAATCCCTTCTCATTCACGGCAAGCAATACGGCAACATCTTCATCGGAGTTCAGCCCTCCTTTGGCTACGAGGGTGATCCCATGCGCCTCCTCTTCTCCAGATCCGCCAGCCCTCACCACGGCTTCGCCGCCTACTACTCCTTCATCCGCGCCGTCTTCGCCGCCGACGCCGTGATCCATTTCGGCACCCACGGAGCTCTCGAGTTCATGCCAGGGAAGCAGGTCGGGATGAGCGACGAGTGCTTTCCCGATCTCCTCATCGGGAGCATTCCCAACATCTACTTCTACGCGGCCAACAATCCCTCCGAAGCCACCATCGCTAAGCGCCGGAGCTACGCCAGCATCATAAGCTACGCGACTCCTCCGGCCGAGTACGCCGGGCTTTACAAGGGACTCAAGCAGATCTCCGATCTCATCTCCTCGTACGGATCCCTGAAGCACGCCGGCCGCCGCGGCCAGCAGATCGTCGGATCCATCATCAGCACCGCGATTCAGTGCAATCTAGACAAGGACGTCAGCCTGCCGCCTTCAGCTACGGAGCTTTCCACAGAGGAGATGGATCTCGTCGTAGGCAAGGTTTATTCCAAGATCATGGAGATCGAGTCGCGGTTGATTCCCTGCGGGCTCCATGTCATCGGAGAGCCTCCATCGGCGCTGGAGACTGCCGCGATGCTGGCCGGTATCGCAGGAATCGACCGTGCGGAAGATGGGATTTCCTCCCTGACAGGAATTCTTGCGGAGAGCGTGGGCAGGGAGACCGATGATTTGCACAGGGGGAGCGCCGCTGGGATCTTGAATGACGTCGAGATTCTTGGCGAGATTAGGGATGCTTCGCGGGGTTGCATCGGAGCGTTCCTGGAGAGTGTCACGAAGAAGACGAGGCCCGCGATGCTAGGGTTTTCGGCTGAGCCATGGATCGTTTACCTTTCGAGAACGAAATTCAAGAAGGCGGACAGGGTGAAGCTGAGGGATCTTTTCCGGTTCCTGAGGGAATGCCTGGGACTTTTGATGGCGAACAACGAACTGGGGAGCTTGAAGAGGGCTCTGGAGGGAGGGTACGTGGAGCCTGGGCCGGGCGGAGACCCGATCCGGAATCCGAAGGTGCTGCCGACGGGAAGGAACATGCACGCGCTGGATCCGCAGGCGATTCCGACGGAGGCGGCCATGGAGAGCGCGAAGGCGGTTGTGGATGGACTATTGGAGAGGCAGAAGGTCGATAATGGCGGAAGGTATCCGGAGACCGTGGCCGTGGTGCTCTGGGGGACGGATAATATAAAGACGTACGGTGAATCGCTCGCTCAGGTGATGTGGATGATCGGAGTGCGGCCGATGCCGGATGCGTTTGGCCGCGTCAATCGTGTCGAACCCGTCGGCCTGGATGAGCTCCGGCGGCCGAGGATCGACGTCGTCGTCAATTGCTCCGGCGTTTTCAGGGATCTGTTCATTAATCAAATGAATCTTCTGGATCGGGCAGTGAAGGCCGTGGCGGAGTTAGCGGAGCCGACGGAACAAAACTACGTGCGGAAGCATGCGCTGGAGCAGGCGGTGGAGCTGGGTGTCTCGGTGCAGGAGGCGGCGACCCGGGTGTTCTCAAACGCCGCCGGGTCCTACTCCTCGAATGTCGGCCTCGCCGTCGAGAACTCGTCGTGGAACGATGAGCGCCAGCTCCAGGAAATGTACTTGAGCCGCAAGTCGTTCGCCTTCGACTCCGACGCCCCATCGGGTGGCGGGGTGGGCATGACGGCCAAGCGGCGGCTGTTCGAGACGGCGCTGCGGACGGCGGAGGCGACGTTCCAGAACCTGGACTCGGCGGAGATATCGGTGACGGACGTGAGCCACTACTTCGACCTGGACCCCACGAATGTGGTGAGGTCGCTGCGGCGGGACGGGAAGAAGCCGGGGGCGTATGTGGCAGATGGGGGGAGGGTGCGGACCGTGGCGGAGGCAGTGCGGCTGGACGTGCGGACAAAGCTGCTGAACCCGAGGTGGCAGGAGGGAGCCTTGAGGATGGGGTACGAGGGGGTGAGGGAGATCGAGAAGCGGCTGACATGCACGGTGGGATGGAGCGCCACATCGGGAGAGGTGGATAACTGGGTGTATGAGGAGGCGAACCGGAGCTTCATAGGGGACGAGGGGATGCTCCGCCGGCTCATGGAGGCGAACCCTAGGTCGTTTCAGAGGATGGTGCAGACCTTCCTGGAGGCCAGCGGGAGGGGATATTGGGACACCTCGCCCGACAATCTACGCCGCCTCAGGTCCCTCTACTCCCGCCTCGAGGACACCATCGAGGGCGTCCTCTCCCCATCACCATGA

Network for GWHGAAEX013251

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02514.15	CobN-Mg_chel	4	885	1.10E-270

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03403	chlH, bchH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0015995	Biological Process	chlorophyll biosynthetic process
GO:0016851	Molecular Function	magnesium chelatase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.060
SRP064423	SRR2545915	Juvenile tuber	20.410
SRP108465	SRR5643513	five period of Gastrodia elata	57.470
	SRR5643514	five period of Gastrodia elata	46.720
	SRR5643515	five period of Gastrodia elata	57.430
	SRR5643524	five period of Gastrodia elata	46.060
	SRR5643525	five period of Gastrodia elata	110.460
	SRR5643528	five period of Gastrodia elata	154.730
	SRR5643658	five period of Gastrodia elata	175.920
	SRR5643659	five period of Gastrodia elata	51.650
	SRR5643660	five period of Gastrodia elata	59.600
	SRR5643661	five period of Gastrodia elata	52.120
	SRR5643662	five period of Gastrodia elata	51.740
	SRR5643663	five period of Gastrodia elata	44.980
	SRR5643664	five period of Gastrodia elata	42.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.520
SRP279888	Gastro	Gastrodia elata tuber	37.09
	Juven	Juvenile tuber	52.62
	Mother_Gastro	Mother tuber of Gastrodia elata	92.86
	Mother_Juven	Mother tuber of Juvenile	56.94