Gene detail

Detail information of GWHGAAEX013252/evm.TU.scaffold_5.177

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434392408\|ref\|YP_007127355.1\|	9.00E-151	cobaltochelatase CobN subunit [Gloeocapsa sp. PCC 7428]
nr	gi\|658032198\|ref\|XP_008351598.1\|	0	PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic-like [Malus domestica]
Swissprot	tr\|Q9FNB0\|CHLH_ARATH	6.00E-180	Magnesium-chelatase subunit ChlH, chloroplastic (Precursor)
trEMBL	tr\|A0A061EWR7\|A0A061EWR7_THECC	0	Magnesium-chelatase subunit chl isoform 2 {ECO:0000313\|EMBL:EOY09236.1}
TAIR	AT5G13630	2.00E-179	magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	3449926	3451486	-

Transcript Sequence
>GWHTAAEX013252 ATGGCTTCTCTTCTACCCGCTCTCCTCTCTCCTCCTTCCCCTTGTTCCAAAACAGAGCACCTCCCTCTCCTCCCTCGCACCAATCTCCTCCCCTTCTTCGCCCCAACCCGCTCCACCTCCCAACCCGCGCTCCGCCGCCTCTCGGCCTCCGCCACCACCTCCCTTTCCGCCCCCCCGGGGCCAAATCCCCACACAATCAATACCCCCACAGTCAAGATCGTCTATGTAGTCCTCGAGGCGCAGTACCAATCCTCTCTCTCCGCAGCTGCGCAGTCCCTTAACGCAGGCCACTTCCCCGCCTCCATCCAGATCTCCGGCTACCTCGTAGAAGATCTCCGGAAAGACGCCTCCTTCCGCCGCTTCTGCGACGACCTCTCCACCGCCAACATCTTCATCGGCTCGCTGATCTTCGTGGAGGACATCGCCCAGAAGGTGAGGTCCGCCTTGGAGCAGGAAAGGTCCCGCCTTGACGCCGTCCTCATCTTTCCCTCCATGCCGGACCTCATGCGGCTCAACAAGCTGGGATCTTTCAGCCTCCCCCAGCTCCGGCAGTCCCAAAGCCCCCTTGTTCAGCTCCTCGGGAGGAAGAAGATGTCAGCGTTTGCGGACGCAATGCTGAAGCTTCTTCGCAGCCTTCCCAAGGTACTCAAGTACCTCCCCAGCGACAGGGCGAGGGACGCCAGGCATTACATCCTCGGCCTCCAGTTCTGGCTCTGCGCCTCCCCCGAAAACCTCCAGAACTTCCTTAAAATGCTCTGCGGCAGCTATTCCCCAGCGCTGAAACCCCAAAGATTGGATTTTGGTGAGCCGGTGCTGTTCCCCGAGAGCGGAATATGGCATCCGTCGGCCCCGCGGATGTTCGAAGATTTGGGCGAGTATCTGAATTGGTACAGATCGAGGGGGCAGCGAGATCCGGAGGAGTCCCCTGTGATCGGCCTGATGCTGCAGAGGAGCCACATCGTGAGCGGAGACCAAGCCCATTACGCGGCCATGATCGAGGAATTGGAAGGCAGGGGGGCGTCCGTGGTGGCGATCTTTTGCGCGGGGCTTGATTTCTCGGGGCCGGTTCAGAGATACTTCGTGAATGAGGCGAAGGGCGGGGCTGTGGTTCACGCGGCGGTGTCTCTGACGGGGTTCGCTCTTGTGGGAGGGCCTGCGAGGCAGGACCGAGGGAGGGCAGTTGAGGTTCTGAGGAAGCTGGACGTGCCTTACCTCGTCGGATTGCCTCTTGTGTTACAGACGACGGAGGAGTGGGAGAGCAGCGATTTGGGATTGCATCCCGTGCAGGTCGCTCTGCAGGTCGCATTGCCGGAGCTTGAAGGGGGGATCGAGCCCATTGTCTTTTCCGGCCGCCACTCCAAAACAGGCAACAAATACATCACCAGCCTCCCTCTATTTTTTTATTTTATTTTTGAAAAAATACTATACTTATACGATAATATAAGTCAAATAATATTATTTATGATCAATAATTTTTTTTAATTTTTTTTAATTTTTAATTAACACGTCACCTTCAATTCAGCACTCTTTTTTAAGTATAAAAAATACAGCAATGCTTAAA

Network for GWHGAAEX013252

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11965.7	DUF3479	72	231	2.50E-44
PF02514.15	CobN-Mg_chel	235	460	9.80E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03403	chlH, bchH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0016851	Molecular Function	magnesium chelatase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.980
SRP064423	SRR2545915	Juvenile tuber	3.350
SRP108465	SRR5643513	five period of Gastrodia elata	7.950
	SRR5643514	five period of Gastrodia elata	8.400
	SRR5643515	five period of Gastrodia elata	5.070
	SRR5643524	five period of Gastrodia elata	8.160
	SRR5643525	five period of Gastrodia elata	5.510
	SRR5643528	five period of Gastrodia elata	4.380
	SRR5643658	five period of Gastrodia elata	5.600
	SRR5643659	five period of Gastrodia elata	6.800
	SRR5643660	five period of Gastrodia elata	7.270
	SRR5643661	five period of Gastrodia elata	6.690
	SRR5643662	five period of Gastrodia elata	5.720
	SRR5643663	five period of Gastrodia elata	3.640
	SRR5643664	five period of Gastrodia elata	5.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.880
SRP279888	Gastro	Gastrodia elata tuber	8.23
	Juven	Juvenile tuber	18.21
	Mother_Gastro	Mother tuber of Gastrodia elata	23.29
	Mother_Juven	Mother tuber of Juvenile	21.04