Gene detail

Detail information of GWHGAAEX013260/evm.TU.scaffold_5.185

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325280864\|ref\|YP_004253406.1\|	2.00E-30	TIR protein [Odoribacter splanchnicus DSM 220712]
KOG	KOG0229	0	Phosphatidylinositol-4-phosphate 5-kinase
nr	gi\|720042930\|ref\|XP_010269395.1\|	0	PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 6-like isoform X2 [Nelumbo nucifera]
Swissprot	tr\|Q9SFB8\|PI5K6_ARATH	0	Phosphatidylinositol 4-phosphate 5-kinase 6
trEMBL	tr\|W9RNX3\|W9RNX3_9ROSA	0	Phosphatidylinositol-4-phosphate 5-kinase 6 {ECO:0000313\|EMBL:EXB62690.1}
TAIR	AT3G07960	0	Phosphatidylinositol-4-phosphate 5-kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	3595454	3598998	-

Transcript Sequence
>GWHTAAEX013260 AAAAAAAAAAAAAAAAAAAACGACGAAAATCTGTGAGGGCGAAGGAATAATGCGGCATCTCGTTCTTCCCCAATCTCAGAACTCGCAATGAAGGTATGGGAATCAGCAGTCCGGCGAGCGCAGTCGCTGGTTTCCCCAACGGCGGTATCGCCGTCTTCGTCGGAGTCCTCCTCCGGCGAGATTCTCCTCTCGAACGGTGATTTCTATACCGGGCAATGGTCGCCGGATAGCGGCGTGGCTCAGGGCTCCGGCAAGTACCTCTGGTCGGACGGGTGCATGTATGAGGGGCAGTGGTCCTCGGACGGGCTGCCGGACGGGCAGGGCAAGTTCTCGTGGCCCTCCGGCGCCACCTACGAGGGGCAGTTCCGGTCGAGCTACATGGACGGCTTCGGTACCTACACCGCCCCTTCTGGCGCCACCTACCGCGGCTTCTGGTCCATGAATCGCAAACACGGCGACGGCACCAAGTCCTTCCCCAACGGCGACTTCTATGACGGCCAGTGGCTTCGCGACCTCCCCGACGGCCGCGGACGCTATGTCTGGGCCAACGGTGACGAGTACACCGGCCAGTGGCGCGCCGGCGTCATACACGGCCCTGGAAGCTTCGCCTGCGCCGGCGGAGAGCGCTACGACGGCGAATGGGACTCCGGCCGGCCGGCAGACGAGCGGTTCGCGGTCGCGGTCGGGGCCCTCAGAGTCTCGGATCCCGACGCCGCCTCGGTCCTGCCCTCGCAGAAGCAGTTCGATTGGCCAAGGGGCGGCAGCTTCGACGGTGATACCGAGAATGATCAGGGCTGCTGCGTTGGCGATCGAACTCCGACCAGATTTCGATCCTGCGCAGGCGGGAATAAGAGGAGGAGGAAAAAGAAGCAAGGGGAGACTATTTCCAAGGGACACAAGAACTACGAATTGATGCTAAATCTCCAGCTCGGAATCAGACATGCTGTAGGCAAGCAACCAAGTCAGCCAATAACTCTTGATCTCAAAACTTCGGCCTTTGATCCCAAGGAAAAAGTATGGACAAAGTTCCCTCCAGAAGGAACTAAACACACGCCTCCGCATCAGTCCTGTGATTTCAAATGGAAGGATTATTGCCCCCTGGTTTTCAGAACACTAAGAAATCTTTTCAAGGTTGATGCAGCAGATTATATGCTCTCAATTTGCGGCGATGATGCGCTTCGAGAGCTCTCTTCTCCTGGAAAGAGCGGAAGCTTCTTCTACCTCACAAATGATGATCGATACATGATTAAAACAATGAAGAAATCTGAAGCCAAAGTTCTTATCAGAATGCTTCCAGCCTATTATAACCATGTCCGGTGCTTTAAGAACACCCTTGTGACAAGATTTTTTGGCTTGCATTGTGTCAAATTAACAGGGCCAACGCAGAAAAAGGTCCGGTTTGTGATCATGGGAAATTTGTTTTGCTCTGAACATTCGATTCACCGGCGATTTGATTTGAAAGGATCATCCCTCGGCCGCATAACTGATAAGCCCGAATCCGAAATTAATGAGACCACCACTTTGAAAGATCTTGATCTGAATTTCTTGTTCAGATTGCAAAGTTCATGGTTTGAGGAGTTTCAGTGGCAAGTGGAAAGGGACTGTGAGTTTCTTGAGCAAGAAAGGATAATGGATTATAGTCTTCTAGTAGGTGTTCATTTCAGAGATGGACACCGAAATGTGGAACCCTCTGATCCAAACAGGGTGCCGGCGGTCAGATTGGGTGTGAACCTTGCTTCCCACGTTGAACGGACTATCAGGAGGATCGGATGCGAAGGCCAGTTGATCGGCGAGCCGACCGGAGAGATCTACGATGTAATACTGTTCTTCGGAATTATAGACATACTGCAGGACTACGATATCAGCAAGAAGCTGGAGCACGCCTACAAATCCTTTCAGTACGACCCGACTTCCATCTCCGCCGTCGACCCCATTCAGTACGCCAAACGGTTCAAAGACTTTGTCTACAAGGTTTTCATAGAAGACACCTGAAAACCGGGCTGATATTGAACCCTAATCCTTCAAAACAGCCATTAATGCCTCTTTGAGAGAGTGCGTAGGAATCATTAGTACAACAGATGATTGTTTCATCATGTAATTATTGTCTTGTTTGCTCGAGGAAATTCTTGTGGTTTTTTGCTGCCGGAAATTTAAACAAATGATTTAGGGGAATACCTTAATTATGATTCTTGATTCATCAAATAAAATAAGGAATTCTGATCTTTACTGCATATTCAAGTTGATATGCTAATTCGGGTTGGCTTTCTCCTCAGTTCATTATATAGCTG

Network for GWHGAAEX013260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02493.19	MORN	40	64	0.087
PF02493.19	MORN	65	87	1.60E-06
PF02493.19	MORN	89	110	0.0018
PF02493.19	MORN	112	133	0.0041
PF02493.19	MORN	135	156	9.80E-07
PF02493.19	MORN	158	179	0.0013
PF01504.17	PIP5K	361	628	1.60E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00889	PIP5K	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		MAPK signaling pathway - yeast	map04011
		Phosphatidylinositol signaling system	map04070
		Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Mitophagy - yeast	map04139
		Regulation of actin cytoskeleton	map04810
		Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0046488	Biological Process	phosphatidylinositol metabolic process
GO:0016307	Molecular Function	phosphatidylinositol phosphate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.320
SRP064423	SRR2545915	Juvenile tuber	1.490
SRP108465	SRR5643513	five period of Gastrodia elata	6.850
	SRR5643514	five period of Gastrodia elata	4.170
	SRR5643515	five period of Gastrodia elata	4.490
	SRR5643524	five period of Gastrodia elata	4.140
	SRR5643525	five period of Gastrodia elata	3.850
	SRR5643528	five period of Gastrodia elata	1.740
	SRR5643658	five period of Gastrodia elata	3.450
	SRR5643659	five period of Gastrodia elata	2.550
	SRR5643660	five period of Gastrodia elata	2.480
	SRR5643661	five period of Gastrodia elata	2.430
	SRR5643662	five period of Gastrodia elata	2.200
	SRR5643663	five period of Gastrodia elata	2.450
	SRR5643664	five period of Gastrodia elata	3.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.230
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.000
SRP279888	Gastro	Gastrodia elata tuber	2.62
	Juven	Juvenile tuber	1.50
	Mother_Gastro	Mother tuber of Gastrodia elata	8.12
	Mother_Juven	Mother tuber of Juvenile	4.65