Detail information of GWHGAAEX013261/evm.TU.scaffold_5.186
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|54301714|ref|YP_131707.1| | 0 | beta-D-galactosidase [Photobacterium profundum SS9] |
| KOG | KOG2024 | 1.00E-31 | Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) |
| nr | gi|672158734|ref|XP_008799110.1| | 0 | PREDICTED: beta-galactosidase isoform X3 [Phoenix dactylifera] |
| trEMBL | tr|M5XF18|M5XF18_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ20103.1} |
| TAIR | 7302519 | 1.00E-31 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3610387 | 3695376 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013261
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02837.17 | Glyco_hydro_2_N | 89 | 260 | 7.70E-43 |
| PF00703.20 | Glyco_hydro_2 | 262 | 393 | 1.20E-15 |
| PF02836.16 | Glyco_hydro_2_C | 400 | 680 | 6.70E-98 |
| PF16353.4 | DUF4981 | 688 | 779 | 2.30E-18 |
| PF02929.16 | Bgal_small_N | 814 | 1099 | 5.20E-66 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01190 | lacZ | Metabolic pathways | map01100 |
| Galactose metabolism | map00052 | ||
| Sphingolipid metabolism | map00600 | ||
| Other glycan degradation | map00511 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004565 | Molecular Function | beta-galactosidase activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0009341 | Cellular Component | beta-galactosidase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.830 |
| SRR2545915 | Juvenile tuber | 21.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.560 |
| SRR5643514 | five period of Gastrodia elata | 37.290 | |
| SRR5643515 | five period of Gastrodia elata | 28.040 | |
| SRR5643524 | five period of Gastrodia elata | 35.230 | |
| SRR5643525 | five period of Gastrodia elata | 13.450 | |
| SRR5643528 | five period of Gastrodia elata | 11.620 | |
| SRR5643658 | five period of Gastrodia elata | 13.350 | |
| SRR5643659 | five period of Gastrodia elata | 22.220 | |
| SRR5643660 | five period of Gastrodia elata | 16.730 | |
| SRR5643661 | five period of Gastrodia elata | 16.120 | |
| SRR5643662 | five period of Gastrodia elata | 6.360 | |
| SRR5643663 | five period of Gastrodia elata | 12.340 | |
| SRR5643664 | five period of Gastrodia elata | 6.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.530 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.640 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 59.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.62 |
| Juven | Juvenile tuber | 24.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.43 | |
| Mother_Juven | Mother tuber of Juvenile | 15.92 |