Detail information of GWHGAAEX013266/evm.TU.scaffold_5.191
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|206889466|ref|YP_002249856.1| | 8.00E-16 | chemotaxis protein CheY [Thermodesulfovibrio yellowstonii DSM 11347] |
| KOG | KOG1601 | 2.00E-74 | GATA-4/5/6 transcription factors |
| nr | gi|695025456|ref|XP_009399982.1| | 4.27E-90 | PREDICTED: two-component response regulator ARR9-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O80365|ARR8_ARATH | 6.00E-75 | Two-component response regulator ARR8 |
| trEMBL | tr|M0SWQ2|M0SWQ2_MUSAM | 2.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08230_001} |
| TAIR | AT2G41310 | 2.00E-74 | response regulator 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3721119 | 3724489 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013266
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module11 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 11 | 131 | 4.70E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14492 | ARR-A | Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.050 |
| SRR2545915 | Juvenile tuber | 9.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.870 |
| SRR5643514 | five period of Gastrodia elata | 54.840 | |
| SRR5643515 | five period of Gastrodia elata | 14.110 | |
| SRR5643524 | five period of Gastrodia elata | 25.940 | |
| SRR5643525 | five period of Gastrodia elata | 28.020 | |
| SRR5643528 | five period of Gastrodia elata | 17.400 | |
| SRR5643658 | five period of Gastrodia elata | 17.770 | |
| SRR5643659 | five period of Gastrodia elata | 63.670 | |
| SRR5643660 | five period of Gastrodia elata | 67.170 | |
| SRR5643661 | five period of Gastrodia elata | 41.630 | |
| SRR5643662 | five period of Gastrodia elata | 32.130 | |
| SRR5643663 | five period of Gastrodia elata | 52.510 | |
| SRR5643664 | five period of Gastrodia elata | 38.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 106.10 |
| Juven | Juvenile tuber | 47.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.34 | |
| Mother_Juven | Mother tuber of Juvenile | 19.60 |