Detail information of GWHGAAEX013272/evm.TU.scaffold_5.200
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219847608|ref|YP_002462041.1| | 1.00E-33 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| nr | gi|743803611|ref|XP_010926966.1| | 0 | PREDICTED: uncharacterized protein LOC105049105 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 7.00E-53 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|F6HA19|F6HA19_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49039.1} |
| TAIR | AT5G19420 | 0 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3808982 | 3860205 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013272
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 326 | 374 | 1.10E-09 |
| PF00415.17 | RCC1 | 377 | 429 | 5.50E-10 |
| PF00415.17 | RCC1 | 432 | 481 | 6.50E-12 |
| PF00415.17 | RCC1 | 496 | 545 | 4.20E-12 |
| PF00415.17 | RCC1 | 549 | 597 | 2.40E-07 |
| PF00415.17 | RCC1 | 602 | 649 | 3.50E-13 |
| PF01363.20 | FYVE | 653 | 719 | 1.20E-11 |
| PF13713.5 | BRX_N | 913 | 948 | 2.20E-16 |
| PF08381.10 | BRX | 1024 | 1079 | 2.30E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.220 |
| SRR2545915 | Juvenile tuber | 13.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.910 |
| SRR5643514 | five period of Gastrodia elata | 9.070 | |
| SRR5643515 | five period of Gastrodia elata | 10.160 | |
| SRR5643524 | five period of Gastrodia elata | 8.460 | |
| SRR5643525 | five period of Gastrodia elata | 10.150 | |
| SRR5643528 | five period of Gastrodia elata | 7.770 | |
| SRR5643658 | five period of Gastrodia elata | 8.710 | |
| SRR5643659 | five period of Gastrodia elata | 9.490 | |
| SRR5643660 | five period of Gastrodia elata | 9.050 | |
| SRR5643661 | five period of Gastrodia elata | 9.580 | |
| SRR5643662 | five period of Gastrodia elata | 7.970 | |
| SRR5643663 | five period of Gastrodia elata | 9.490 | |
| SRR5643664 | five period of Gastrodia elata | 9.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.23 |
| Juven | Juvenile tuber | 18.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.46 | |
| Mother_Juven | Mother tuber of Juvenile | 9.07 |