Detail information of GWHGAAEX013274/evm.TU.scaffold_5.202
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310820193|ref|YP_003952551.1| | 7.00E-06 | glutaredoxin [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG2824 | 1.00E-58 | Glutaredoxin-related protein |
| nr | gi|743845482|ref|XP_010938597.1| | 3.09E-80 | PREDICTED: uncharacterized protein At5g39865-like [Elaeis guineensis] |
| Swissprot | tr|Q9FLE8|Y5986_ARATH | 6.00E-40 | Uncharacterized protein At5g39865 |
| trEMBL | tr|I1H5D4|I1H5D4_BRADI | 7.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G62160.1} |
| TAIR | AT5G13810 | 1.00E-58 | Glutaredoxin family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3947035 | 3949079 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013274
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00462.23 | Glutaredoxin | 49 | 117 | 2.90E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0009055 | Molecular Function | electron carrier activity |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.580 |
| SRR2545915 | Juvenile tuber | 8.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.180 |
| SRR5643514 | five period of Gastrodia elata | 10.430 | |
| SRR5643515 | five period of Gastrodia elata | 22.570 | |
| SRR5643524 | five period of Gastrodia elata | 8.680 | |
| SRR5643525 | five period of Gastrodia elata | 57.540 | |
| SRR5643528 | five period of Gastrodia elata | 40.060 | |
| SRR5643658 | five period of Gastrodia elata | 35.870 | |
| SRR5643659 | five period of Gastrodia elata | 11.200 | |
| SRR5643660 | five period of Gastrodia elata | 6.530 | |
| SRR5643661 | five period of Gastrodia elata | 9.940 | |
| SRR5643662 | five period of Gastrodia elata | 18.710 | |
| SRR5643663 | five period of Gastrodia elata | 12.810 | |
| SRR5643664 | five period of Gastrodia elata | 96.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.210 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.77 |
| Juven | Juvenile tuber | 4.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 63.18 | |
| Mother_Juven | Mother tuber of Juvenile | 18.31 |