Detail information of GWHGAAEX013277/evm.TU.scaffold_5.205
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 8.00E-55 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|743822659|ref|XP_010932330.1| | 0 | PREDICTED: pectinesterase-like [Elaeis guineensis] |
| Swissprot | tr|Q43062|PME_PRUPE | 0 | Pectinesterase PPE8B (Precursor) |
| trEMBL | tr|A0ZNK2|A0ZNK2_PYRCO | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G43270 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 3983847 | 3986410 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013277
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 41 | 136 | 6.30E-12 |
| PF01095.18 | Pectinesterase | 172 | 471 | 1.40E-143 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.320 |
| SRR2545915 | Juvenile tuber | 13.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.110 |
| SRR5643514 | five period of Gastrodia elata | 21.580 | |
| SRR5643515 | five period of Gastrodia elata | 26.490 | |
| SRR5643524 | five period of Gastrodia elata | 29.360 | |
| SRR5643525 | five period of Gastrodia elata | 271.320 | |
| SRR5643528 | five period of Gastrodia elata | 91.590 | |
| SRR5643658 | five period of Gastrodia elata | 134.670 | |
| SRR5643659 | five period of Gastrodia elata | 69.680 | |
| SRR5643660 | five period of Gastrodia elata | 59.010 | |
| SRR5643661 | five period of Gastrodia elata | 72.770 | |
| SRR5643662 | five period of Gastrodia elata | 119.370 | |
| SRR5643663 | five period of Gastrodia elata | 96.870 | |
| SRR5643664 | five period of Gastrodia elata | 219.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 55.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 34.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 128.67 |
| Juven | Juvenile tuber | 23.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.79 | |
| Mother_Juven | Mother tuber of Juvenile | 40.66 |