Detail information of GWHGAAEX013278/evm.TU.scaffold_5.207
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291279671|ref|YP_003496506.1| | 4.00E-76 | pyrroline-5-carboxylate reductase [Deferribacter desulfuricans SSM1] |
| KOG | KOG3124 | 6.00E-121 | Pyrroline-5-carboxylate reductase |
| nr | gi|743845524|ref|XP_010938606.1| | 1.58E-160 | PREDICTED: pyrroline-5-carboxylate reductase-like [Elaeis guineensis] |
| Swissprot | tr|O04016|P5CR_ACTCH | 2.00E-131 | Pyrroline-5-carboxylate reductase |
| trEMBL | tr|M0RTV4|M0RTV4_MUSAM | 6.00E-159 | Pyrroline-5-carboxylate reductase {ECO:0000256|RuleBase:RU003903} |
| TAIR | AT5G14800 | 6.00E-121 | pyrroline-5- carboxylate (P5C) reductase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 4032317 | 4076952 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013278
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03807.16 | F420_oxidored | 43 | 137 | 1.10E-17 |
| PF14748.5 | P5CR_dimer | 199 | 302 | 4.20E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006561 | Biological Process | proline biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004735 | Molecular Function | pyrroline-5-carboxylate reductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.610 |
| SRR2545915 | Juvenile tuber | 17.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.270 |
| SRR5643514 | five period of Gastrodia elata | 42.040 | |
| SRR5643515 | five period of Gastrodia elata | 33.220 | |
| SRR5643524 | five period of Gastrodia elata | 48.300 | |
| SRR5643525 | five period of Gastrodia elata | 24.450 | |
| SRR5643528 | five period of Gastrodia elata | 21.640 | |
| SRR5643658 | five period of Gastrodia elata | 22.700 | |
| SRR5643659 | five period of Gastrodia elata | 17.980 | |
| SRR5643660 | five period of Gastrodia elata | 19.760 | |
| SRR5643661 | five period of Gastrodia elata | 22.590 | |
| SRR5643662 | five period of Gastrodia elata | 16.900 | |
| SRR5643663 | five period of Gastrodia elata | 19.710 | |
| SRR5643664 | five period of Gastrodia elata | 18.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.740 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.420 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.05 |
| Juven | Juvenile tuber | 30.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.14 | |
| Mother_Juven | Mother tuber of Juvenile | 21.28 |