Gene detail

Detail information of GWHGAAEX013281/evm.TU.scaffold_5.211

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|384215071\|ref\|YP_005606236.1\|	9.00E-12	hypothetical protein BJ6T_13600 [Bradyrhizobium japonicum USDA 6]
KOG	KOG2449	2.00E-78	Methylmalonate semialdehyde dehydrogenase
nr	gi\|731910919\|gb\|AIZ68163.1\|	0	tetratricopeptide repeat protein 1-like protein [Ornithogalum saundersiae]
Swissprot	tr\|Q5XEP2\|HSOP2_ARATH	3.00E-20	Hsp70-Hsp90 organizing protein 2
trEMBL	tr\|A0A067KVT9\|A0A067KVT9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40222.1}
TAIR	AT1G04190_3	2.00E-78	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	4152094	4220544	-

Transcript Sequence
>GWHTAAEX013281 AGGTAGACGAGTAGGTTTTGGATACAGAACGAGTGAATAATGGCGGAGCTGACGGGAGGCGTCGCTGTTTCTGGTGTTGGAAGGGATGGAGCTTCGCTTAAGGATCAGGGCAATGAGTTCTTCAAATCCGGAAACTACCTCAAAGCTGCCGCACTCTACACCCAGGCTATCAAACTCGATCCGTCAAACCCGACTCTTTATAGCAATCGGGCTGCAGCATTCTTACAATTGGTCAAGCTCAACAAAGCGCTTGCGGATGCAGAGACTACAATTACTCTCAACCCCCATTGGGAGAAGGGTTATTTCAGAAAAGGTTGTGTTCTGGAAGCTATGGAGCGGTATGATGATGCTGTGGCTGCACTCCAAGAAGCTTTGGTGTACAATCCACAAAGCCTAGAAGTTTCTAAGAAGATCAAGAAACTTACTCAATTATCCAAGGACAAGAAGCGAACTCAAGAAATAGAGGATATCAGGTCCAACATTGACATGCAAAAGTATTTACTGCCTTTGAAATCTGAATTGGATACAAATTTTGGCTCCATAGGAAATGATGAAGCATTTTTTTTTCTTGTCAATATGATCGAATCTGCTATAAAAGTTTGGCATAACACGTCAAAGGTAGATCCGAGGGTTTATTTTCTTCTTGATAAAGAAAAGACACAACTGGATAAATACCCTGCTATGGTTAATGTTGATAAGGCATTCGAGTCACCCCATACACACAGCGATTGCTTTTCTTTTTTAAGACAGTATGCTGAGGAGTCATTTTCAAAAGCTGCTTGCTTGGTAGCGCCCAAGAGCATTATAGCATATCCTCAGGTATGGAAAGGCCAGGGTTTGAGAAAGTGGAAGCATGGGAATGCTGATGGATTCTTTGTACAGTTTGAGTCACCTGTTTTGCGTAAACTATGGTTTGTTTCCAGTTTATCAGAAAAGGGCCAAACCTTATGCCGGGATCCAGAGGCTTTGGACATCAGTTTACATGAGGTTCTTCCACGTTTGTTCAAGGAACCCCTCACAGCTCATCCTTAATATTTCCTACAAGGTGGTAATTTTGTTAAGTCAGGAAAAATGCTACGGAGCCCTCAAAATTTTTCCAGTTCTACCCAAAAAGTACGAGAGAATGCATAAAAAATGGGGCTAGAAAAATAGCAGTTCTTTTTGTGTGGTAAGCGGGATTTAAATCTTTGATCTGTCAAGAATTCCAACCGAAGAGCTTCAAAATACTGTCTCACTCCCTTGAGACTGGCTGAAGCTGTTCCTTTCAGACTATTTTCTTGTCCAAAGCTTTATCTATTTTTCAAAAAATTGTATGGGTAATATATTAAGTTAATTTGACTTTATTTGCATATCAAACACCTAGTTTTCTTGCTTAACAAATGGATGGATTTCATACATTTGGTTGTCGTGCAAGTCATAACCATATCGTTATTATGGCATAATTCAATGTTTTAAAAGCGATTAATAAAATATTTATTTTGCA

Network for GWHGAAEX013281

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13414.5	TPR_11	24	64	1.90E-11
PF07719.16	TPR_2	86	117	3.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.330
SRP064423	SRR2545915	Juvenile tuber	36.200
SRP108465	SRR5643513	five period of Gastrodia elata	32.940
	SRR5643514	five period of Gastrodia elata	36.110
	SRR5643515	five period of Gastrodia elata	29.100
	SRR5643524	five period of Gastrodia elata	34.580
	SRR5643525	five period of Gastrodia elata	24.740
	SRR5643528	five period of Gastrodia elata	16.930
	SRR5643658	five period of Gastrodia elata	21.650
	SRR5643659	five period of Gastrodia elata	38.060
	SRR5643660	five period of Gastrodia elata	40.510
	SRR5643661	five period of Gastrodia elata	37.170
	SRR5643662	five period of Gastrodia elata	36.040
	SRR5643663	five period of Gastrodia elata	35.890
	SRR5643664	five period of Gastrodia elata	38.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.200
SRP279888	Gastro	Gastrodia elata tuber	41.98
	Juven	Juvenile tuber	57.60
	Mother_Gastro	Mother tuber of Gastrodia elata	29.87
	Mother_Juven	Mother tuber of Juvenile	41.16