Detail information of GWHGAAEX013288/evm.TU.scaffold_5.222


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-31FOG: Predicted E3 ubiquitin ligase
nrgi|672192156|ref|XP_008775696.1|1.25E-32PREDICTED: RING-H2 finger protein ATL64-like [Phoenix dactylifera]
Swissprottr|Q9LZJ6|ATL5_ARATH5.00E-32RING-H2 finger protein ATL5
trEMBLtr|V7AZD5|V7AZD5_PHAVU2.00E-32Uncharacterized protein {ECO:0000313|EMBL:ESW10929.1}
TAIRAT3G626902.00E-31AtL5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001644416834442674-
Transcript Sequence

Network for GWHGAAEX013288

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21041472.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.320
SRR2545915Juvenile tuber0.100
SRP108465SRR5643513five period of Gastrodia elata3.460
SRR5643514five period of Gastrodia elata4.020
SRR5643515five period of Gastrodia elata4.410
SRR5643524five period of Gastrodia elata2.480
SRR5643525five period of Gastrodia elata67.100
SRR5643528five period of Gastrodia elata23.920
SRR5643658five period of Gastrodia elata18.720
SRR5643659five period of Gastrodia elata2.450
SRR5643660five period of Gastrodia elata0.320
SRR5643661five period of Gastrodia elata1.070
SRR5643662five period of Gastrodia elata4.310
SRR5643663five period of Gastrodia elata3.970
SRR5643664five period of Gastrodia elata12.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.060
SRR6049655Rhizomagastrodiae_C368-T10_good_19.790
SRR6049656Rhizomagastrodiae_C368-T07_good_16.860
SRR6049657Rhizomagastrodiae_C368-T07_good_112.450
SRR6049658Rhizomagastrodiae_C368-T04_good_17.600
SRR6049659Rhizomagastrodiae_C368-T04_good_17.670
SRR6049660Rhizomagastrodiae_C368-T01_good_110.680
SRR6049661Rhizomagastrodiae_C368-T04_good_15.640
SRR6049662Rhizomagastrodiae_C368-T01_good_111.420
SRR6049663Rhizomagastrodiae_C368-T01_good_110.810
SRR6049664Rhizomagastrodiae_C368-T10_good_18.780
SRR6049665Rhizomagastrodiae_C368-T10_good_18.780
SRP279888GastroGastrodia elata tuber 4.29
JuvenJuvenile tuber0.15
Mother_GastroMother tuber of Gastrodia elata 5.04
Mother_JuvenMother tuber of Juvenile 1.42