Detail information of GWHGAAEX013290/evm.TU.scaffold_5.225
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|57641458|ref|YP_183936.1| | 4.00E-37 | 50S ribosomal protein L19e [Thermococcus kodakarensis KOD1] |
| KOG | KOG1696 | 2.00E-118 | 60s ribosomal protein L19 |
| nr | gi|729385615|ref|XP_010551079.1| | 2.17E-119 | PREDICTED: 60S ribosomal protein L19-3-like [Tarenaya hassleriana] |
| Swissprot | tr|Q9LUQ6|RL192_ARATH | 5.00E-119 | 60S ribosomal protein L19-2 |
| trEMBL | tr|E9NZT0|E9NZT0_PHAVU | 5.00E-118 | Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574} |
| TAIR | AT3G16780 | 2.00E-118 | Ribosomal protein L19e family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 4518147 | 4534524 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013290
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01280.19 | Ribosomal_L19e | 4 | 146 | 5.70E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02885 | RP-L19e, RPL19 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0022625 | Cellular Component | cytosolic large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 931.240 |
| SRR2545915 | Juvenile tuber | 822.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 308.930 |
| SRR5643514 | five period of Gastrodia elata | 341.850 | |
| SRR5643515 | five period of Gastrodia elata | 336.800 | |
| SRR5643524 | five period of Gastrodia elata | 323.750 | |
| SRR5643525 | five period of Gastrodia elata | 348.160 | |
| SRR5643528 | five period of Gastrodia elata | 331.960 | |
| SRR5643658 | five period of Gastrodia elata | 348.720 | |
| SRR5643659 | five period of Gastrodia elata | 567.090 | |
| SRR5643660 | five period of Gastrodia elata | 599.080 | |
| SRR5643661 | five period of Gastrodia elata | 596.830 | |
| SRR5643662 | five period of Gastrodia elata | 624.970 | |
| SRR5643663 | five period of Gastrodia elata | 668.470 | |
| SRR5643664 | five period of Gastrodia elata | 685.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 392.590 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 237.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 407.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 478.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 565.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 581.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 465.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 468.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 368.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 426.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 346.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 346.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 824.31 |
| Juven | Juvenile tuber | 497.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 229.41 | |
| Mother_Juven | Mother tuber of Juvenile | 273.91 |