Detail information of GWHGAAEX013295/evm.TU.scaffold_5.231


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159901087|ref|YP_001547334.1|0GTP-binding protein TypA [Herpetosiphon aurantiacus DSM 785]
KOGKOG04620Elongation factor-type GTP-binding protein
nrgi|720074263|ref|XP_010278965.1|0PREDICTED: translation factor GUF1 homolog, chloroplastic [Nelumbo nucifera]
Swissprottr|A4RZA6|GUFP_OSTLU3.00E-39Translation factor GUF1 homolog, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03138} (Precursor)
trEMBLtr|W1NZV3|W1NZV3_AMBTC0Uncharacterized protein {ECO:0000313|EMBL:ERN00904.1}
TAIRAT5G136500elongation factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001646871674769945+
Transcript Sequence

Network for GWHGAAEX013295

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.26GTP_EFTU852762.80E-52
PF03144.24GTP_EFTU_D23003691.40E-11
PF00679.23EFG_C4775621.20E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.440
SRR2545915Juvenile tuber30.770
SRP108465SRR5643513five period of Gastrodia elata25.440
SRR5643514five period of Gastrodia elata22.310
SRR5643515five period of Gastrodia elata23.550
SRR5643524five period of Gastrodia elata21.100
SRR5643525five period of Gastrodia elata8.670
SRR5643528five period of Gastrodia elata7.210
SRR5643658five period of Gastrodia elata6.910
SRR5643659five period of Gastrodia elata23.980
SRR5643660five period of Gastrodia elata25.670
SRR5643661five period of Gastrodia elata24.880
SRR5643662five period of Gastrodia elata28.900
SRR5643663five period of Gastrodia elata29.240
SRR5643664five period of Gastrodia elata26.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.830
SRR6049655Rhizomagastrodiae_C368-T10_good_121.590
SRR6049656Rhizomagastrodiae_C368-T07_good_120.820
SRR6049657Rhizomagastrodiae_C368-T07_good_126.910
SRR6049658Rhizomagastrodiae_C368-T04_good_123.650
SRR6049659Rhizomagastrodiae_C368-T04_good_124.220
SRR6049660Rhizomagastrodiae_C368-T01_good_123.250
SRR6049661Rhizomagastrodiae_C368-T04_good_122.040
SRR6049662Rhizomagastrodiae_C368-T01_good_123.490
SRR6049663Rhizomagastrodiae_C368-T01_good_120.260
SRR6049664Rhizomagastrodiae_C368-T10_good_121.910
SRR6049665Rhizomagastrodiae_C368-T10_good_121.910
SRP279888GastroGastrodia elata tuber 34.44
JuvenJuvenile tuber35.63
Mother_GastroMother tuber of Gastrodia elata 26.92
Mother_JuvenMother tuber of Juvenile 33.74