Detail information of GWHGAAEX013302/evm.TU.scaffold_5.238
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|42522839|ref|NP_968219.1| | 0 | fumarate hydratase [Bdellovibrio bacteriovorus HD100] |
| KOG | KOG1317 | 0 | Fumarase |
| nr | gi|595795235|ref|XP_007200983.1| | 0 | hypothetical protein PRUPE_ppa004758mg [Prunus persica] |
| Swissprot | tr|Q9FI53|FUM2_ARATH | 0 | Fumarate hydratase 2, chloroplastic (Precursor) |
| trEMBL | tr|M5VLX7|M5VLX7_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ02182.1} |
| TAIR | AT5G50950 | 0 | FUMARASE 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 4895936 | 4934564 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013302
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00206.19 | Lyase_1 | 43 | 373 | 7.10E-116 |
| PF10415.8 | FumaraseC_C | 439 | 492 | 2.10E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006106 | Biological Process | fumarate metabolic process |
| GO:0006099 | Biological Process | tricarboxylic acid cycle |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004333 | Molecular Function | fumarate hydratase activity |
| GO:0016829 | Molecular Function | lyase activity |
| GO:0045239 | Cellular Component | tricarboxylic acid cycle enzyme complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.410 |
| SRR2545915 | Juvenile tuber | 40.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 65.260 |
| SRR5643514 | five period of Gastrodia elata | 94.120 | |
| SRR5643515 | five period of Gastrodia elata | 70.390 | |
| SRR5643524 | five period of Gastrodia elata | 92.130 | |
| SRR5643525 | five period of Gastrodia elata | 64.390 | |
| SRR5643528 | five period of Gastrodia elata | 64.040 | |
| SRR5643658 | five period of Gastrodia elata | 71.880 | |
| SRR5643659 | five period of Gastrodia elata | 35.680 | |
| SRR5643660 | five period of Gastrodia elata | 35.920 | |
| SRR5643661 | five period of Gastrodia elata | 38.640 | |
| SRR5643662 | five period of Gastrodia elata | 34.970 | |
| SRR5643663 | five period of Gastrodia elata | 37.220 | |
| SRR5643664 | five period of Gastrodia elata | 34.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 65.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 89.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 83.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 54.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 55.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 56.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 65.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 65.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 99.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 83.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 101.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 101.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.08 |
| Juven | Juvenile tuber | 55.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.87 | |
| Mother_Juven | Mother tuber of Juvenile | 46.12 |