Detail information of GWHGAAEX013303/evm.TU.scaffold_5.239


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG20614.00E-159Uncharacterized MYND Zn-finger protein
nrgi|743776766|ref|XP_010918797.1|0PREDICTED: programmed cell death protein 2 isoform X1 [Elaeis guineensis]
trEMBLtr|M0T4B1|M0T4B1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P05130_001}
TAIRAT4G022204.00E-159zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001649366224954410-
Transcript Sequence

Network for GWHGAAEX013303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01753.17zf-MYND1802189.90E-06
PF04194.12PDCD2_C2514055.40E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.810
SRR2545915Juvenile tuber33.110
SRP108465SRR5643513five period of Gastrodia elata17.520
SRR5643514five period of Gastrodia elata21.830
SRR5643515five period of Gastrodia elata16.710
SRR5643524five period of Gastrodia elata23.010
SRR5643525five period of Gastrodia elata14.110
SRR5643528five period of Gastrodia elata11.320
SRR5643658five period of Gastrodia elata6.160
SRR5643659five period of Gastrodia elata26.700
SRR5643660five period of Gastrodia elata27.860
SRR5643661five period of Gastrodia elata28.060
SRR5643662five period of Gastrodia elata24.850
SRR5643663five period of Gastrodia elata21.640
SRR5643664five period of Gastrodia elata26.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.660
SRR6049655Rhizomagastrodiae_C368-T10_good_121.160
SRR6049656Rhizomagastrodiae_C368-T07_good_128.230
SRR6049657Rhizomagastrodiae_C368-T07_good_130.270
SRR6049658Rhizomagastrodiae_C368-T04_good_125.620
SRR6049659Rhizomagastrodiae_C368-T04_good_123.010
SRR6049660Rhizomagastrodiae_C368-T01_good_123.100
SRR6049661Rhizomagastrodiae_C368-T04_good_126.260
SRR6049662Rhizomagastrodiae_C368-T01_good_132.410
SRR6049663Rhizomagastrodiae_C368-T01_good_129.070
SRR6049664Rhizomagastrodiae_C368-T10_good_126.280
SRR6049665Rhizomagastrodiae_C368-T10_good_126.280
SRP279888GastroGastrodia elata tuber 32.50
JuvenJuvenile tuber48.75
Mother_GastroMother tuber of Gastrodia elata 11.89
Mother_JuvenMother tuber of Juvenile 20.53