Detail information of GWHGAAEX013306/evm.TU.scaffold_5.242
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 4.00E-50 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|672143775|ref|XP_008795770.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 41 [Phoenix dactylifera] |
| Swissprot | tr|Q8RXK7|PME41_ARATH | 0 | Pectinesterase 41 (Precursor) |
| trEMBL | tr|M0RTY6|M0RTY6_MUSAM | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT4G02330 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 4985606 | 4990359 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013306
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 43 | 192 | 1.90E-16 |
| PF01095.18 | Pectinesterase | 255 | 554 | 1.50E-131 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
| GO:0030599 | Molecular Function | pectinesterase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.610 |
| SRR2545915 | Juvenile tuber | 10.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 118.230 |
| SRR5643514 | five period of Gastrodia elata | 66.000 | |
| SRR5643515 | five period of Gastrodia elata | 148.330 | |
| SRR5643524 | five period of Gastrodia elata | 122.710 | |
| SRR5643525 | five period of Gastrodia elata | 53.900 | |
| SRR5643528 | five period of Gastrodia elata | 57.330 | |
| SRR5643658 | five period of Gastrodia elata | 24.750 | |
| SRR5643659 | five period of Gastrodia elata | 87.950 | |
| SRR5643660 | five period of Gastrodia elata | 57.730 | |
| SRR5643661 | five period of Gastrodia elata | 114.250 | |
| SRR5643662 | five period of Gastrodia elata | 126.390 | |
| SRR5643663 | five period of Gastrodia elata | 103.870 | |
| SRR5643664 | five period of Gastrodia elata | 24.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 69.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 62.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 94.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 108.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 108.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 54.36 |
| Juven | Juvenile tuber | 16.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 205.83 | |
| Mother_Juven | Mother tuber of Juvenile | 56.37 |