Gene detail

Detail information of GWHGAAEX013308/evm.TU.scaffold_5.245

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427716281\|ref\|YP_007064275.1\|	1.00E-88	9-cis-epoxycarotenoid dioxygenase [Calothrix sp. PCC 7507]
KOG	KOG1285	0	Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nr	gi\|334361424\|gb\|AEG78287.1\|	0	9-cis-epoxycarotenoid dioxygenase [Gladiolus hybrid cultivar]
Swissprot	tr\|C3VEQ3\|NCED_ONCHC	0	9-cis-epoxycarotenoid dioxygenase, chloroplastic (Precursor)
trEMBL	tr\|F6MF67\|F6MF67_9ASPA	0	9-cis-epoxycarotenoid dioxygenase {ECO:0000313\|EMBL:AEG78287.1}
TAIR	AT1G78390	0	nine-cis-epoxycarotenoid dioxygenase 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	5076279	5096459	+

Transcript Sequence
>GWHTAAEX013308 GGAATATTTGGTTTGGCTTGCGCTGATTGTGGCTGATGTTGTTATGCCATTTTATCGTTGTTTCCTTGCAATTTGAGAACTGCTTACTTATCATATGGTAATGCTGTTGTCGGATTTCTATATTACCAAACCGTGAGCGACGAGAACTCCGAGCGTTCATTGTGTTTGCAATCTGGTTGATGCTACGAAGCTCGCAAATGCTGCACTCAAATTAGCAACTGGCTGCAAGGAATGAGCCCGTTATTGTTTTCGACATCTTTTTATTTGTTGAACTTTGCTTTCCATTCGGGTTTACAACCTATATCTTTAGAATATGACCGATTTACTTCTCAAATTTATTTTGGTGCAGAGTATGCGATGCTGTTGACTAAGCTAGTGGCTGATTGGTGGCCTTCTGCCGCAATTTTTTGCTTTGGAATATACCCTCTTTTGTAAGCAGGAGCAAGTCTTCAGGCCTTTTTGACTGACAGAAGGAGCATCCAAACCCAAATTAAAAGCAGAGGAACTCAAATTCCAGGGCAAGCGATGGCCTCAGCCATGATGCCCACCTCCACATTCATCCCCTCCAAAAAGCCTCGAAGGGGGCTGACCGGCCCTGCAGTCCGTTTCCCGGTCATAGAGCTCACCCCCACCGCCCCCTCCATTTCCCCACTTCAACCCACGGACCACGAGGAACCCCCCCCATCCCCTGGGCCCGCCCGCCCCAAATGGAACCTCCTCCAGCGGGCGGTGTGGGCGGGGCTGGATGCGGTGGAATCGTCCCTCCTCTCTGGAAAGCGGGTGGCGCCGCCCGCTGGAAACTTCGCTCCGGTTGGGGAGCGGTCGCCGCGCGGCGGTCTCGCAGTCGAGGGCCGCATCCCGCCGTTCATCGACGGGGTCTACGTGCGCAACGGCGCGAACCCCCTCTTCGCCCCCGTGGCAGGGCACCACCTCTTCGACGGGGACGGGATGGTGCACGCCGTGCGCATCCGCGGCGGCGCGGCGTCCTACGCCTGCCGGTTCACGGAGACGGAACGGCTGAAGCAGGAGCGGGCCCTGGGCCGTGCTGTGTTCCCCAAGGCGGTGGGGGACCTCCACGGCCGCTCTGGCCTCGCCCGCCTCCTCGTCTTCTTCGCCCGCGGCCTCGCCGGCCTCATCGACCCCTCCCGCGGCACCGGCGCAGCTAACGCCGGCCTCGTTTTCTTCAACAACCGCCTCCTAGCCATGTCGGAGGACGACCTCCCCTACCACATTCGGATCGATCCCTCCGACGGCGATCTGACGACGTCCGGCCGCTTCGACTTTGGCGGCCAGCTGAAGTCGCCGATGATCGCGCACCCGAAGCTGGATCCGGAGAGCGGCGAGCTCTTCGCACTCGGATATGACGTGATCAGCAGGCCTTATCTCAGGTACTTCCGCTTCTCCCCCTCCGGGGAGAAATCAACGGATGTAGAGATCCCGCTGAGCCAGCCGACGATGATCCACGACTTCGCTATCACCAGGAGATTCGTTGTGGTGCCGGACCAGCAGGTGGTGTTCGAATTAGGGCGGATGATCGGCGGCGGTTCGCCGGTGGTCTTCGACAAGGGGAAGACCGCCCGGTTCGGGTTTGTCCCCAAATACGCTGCGGACGCGTCGGAGATGGTTTGGGTCGACGTCCCGGGCTGCTTCTGCTTCCATTTCTGGAATGCGTGGGAGGAGGAGGAGCGGGATGAGGTGGTGGTTTTGGGGTCGTCGATGACTCCGCCGGACGCCATATTCAATGTCGAGGATGGGGGGGATCTGCGGAGCGAGCTGGTTGAGATTCGGGTGAATCTCCGGACGCGGGAGTCGACCCGGCGGAGTGTTGTTCGGGAGAAGATGAATCTGGAGGCGGGGATGGTGAACCGGAACTGGTTGGGGAGAAAAACCCGGTTCGCGTATCTGGCGATGGCGGAGCCGTGGCCGCGGGTGTCGGGTTTCGCGAAGGTGGATTTGGGGAGCGGGGAGGTGCGGAGGTTCACGTACGGGGAGGGAAGGTACGGAGGGGAGCCGTGCTTTGTGCCGAGGGAGGGGTGCGGGAGGGAGGATGGCGGGTACGTGCTGGCGCACGTGCGGGACGAGCGGGAGGGGAGGTCGGAGCTGCTGGTGGTGAACGCCGCCGACATGCGGCTGGAGGCGGCCGTCCGGCTGCCGTCCAGGGTGCCGTATGGGTTCCACGGAACGTTCGTCGGCGCGCGTGAGCTCGAGTCGCAGATCACATGACAAGGATGCGAAGGGATTCATTCGTTTTGCTGCCTGAGGGATTGCTATTTTCAGCTCCCCGGTTTTTATATAGTGGCATACTTGTAATTTTGGTTTGGCCGGAGGAGACCAGCTTGTAGCTTCGGTGATGCGGCGACGGGACCGCGGAGCTCAGCTCGTCTCCTACTCTGCCTTTTT

Network for GWHGAAEX013308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.14	RPE65	103	555	8.50E-100

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.440
SRP064423	SRR2545915	Juvenile tuber	0.210
SRP108465	SRR5643513	five period of Gastrodia elata	3.280
	SRR5643514	five period of Gastrodia elata	4.560
	SRR5643515	five period of Gastrodia elata	3.300
	SRR5643524	five period of Gastrodia elata	1.760
	SRR5643525	five period of Gastrodia elata	2.730
	SRR5643528	five period of Gastrodia elata	23.920
	SRR5643658	five period of Gastrodia elata	8.370
	SRR5643659	five period of Gastrodia elata	0.210
	SRR5643660	five period of Gastrodia elata	0.140
	SRR5643661	five period of Gastrodia elata	0.200
	SRR5643662	five period of Gastrodia elata	0.170
	SRR5643663	five period of Gastrodia elata	0.040
	SRR5643664	five period of Gastrodia elata	0.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.540
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.660
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	1.00
	Mother_Gastro	Mother tuber of Gastrodia elata	5.20
	Mother_Juven	Mother tuber of Juvenile	4.18