Gene detail

Detail information of GWHGAAEX013310/evm.TU.scaffold_5.248

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4765	Uncharacterized conserved protein
nr	gi\|743792606\|ref\|XP_010923727.1\|	PREDICTED: uncharacterized protein LOC105046736 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0RMA2\|M0RMA2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P28780_001}
TAIR	AT1G17210	IAP-like protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	5176694	5221809	+

Transcript Sequence
>GWHTAAEX013310 TAGCTTTGGGATTAAAGTCCGAGCGCCTTATCGGGAGCTTTTATGAGGAGGTTGCGAAAGAAAATGAAAGAAGAGGTCGTGAGCCCGGGAACGATGGAGGCCGTCGTTTTGGCGAGATCCTCTTCTCCTCCCCTGACTTCAGTCGCGAGTTCTGCTGCGGCATCTTCATCACATGCTGTGCCAGTAAATATAGGCTCCTCACATTTTCCATGCAGACCATGGGAAAGAGGTGATTTACTACGGCGACTTGCAACATTCAAGCCATCTAATTGGTTTGCAAAACCTCAGGGAGCAAGTTCTCTGGCATGTGCTCGAAGGGGATGGGTTAACATTGAAACTGATAAGATTGAATGTGAGACATGTGGTTCGTTCTTAACATTTGTTACATCAGCATCCAGTACATCTATTTGTGATGAACATCTTGCACAAGGCTTTGCTGAGAATTTGGACTCCGGCCACAATAGTACTTGCCCATGGAGAGGAAATTGTTGTGCTGACAGTTTGGCACAGTTTCCTCCTTCTACTTTGCCAGCTCTTATTGGAGGTTACAAGGACCGGTGTGATGGACTCTTACAGTTTTCCTCTCTCCCAGTAATTGCTTCATCTGCATTTGAAACCATGAAACTGTCAAGAAGTGCACAGATTGATCGCTTTCTGTTACACTCACAATTTCCATCGGGGGAGTTAGGGTTTAAAGCTGATAACATGCCTGTGCCAGAAGTATCTCGAGAGGATGCCTTCTACCATCATTATCAGGCCCAGAAGTTTATAAGTCTTTGTGGCTGGGAGCCTAGATGGCTTCCTAACGTACAGGACTGCGAAGAGAATTCTACTCAATCTGCGAGACATGCATGCTCATTTGTCCCAAATGAGGTTGAGCATCACCATGCAAAATGTACTGAATTTACTAAATATGCAGTCTCTGCATCAGCTAGAAAAAATAGAGGAAAGGAAAAGCTTTTTCATGAATGGGAATATAATACCAAGTCTCCTCTATTAGATTGTAGCTTATGTGGTGCTACCGTTAGAGTGTCGGACTTCGAGAGAGTTCCTCGACCTGCCAAATTTGGCCCTAACAACATTGACAACCCTGACAGTTGCAAAAAGTTGGCTTTGACACGTGGAATCAGTGCTGCTAGTGGAATAAATGGGTGGATCGCTGCAGATGAAATAGAGAAGGATCGTGATGAGGCAGCTACCACAGATGATGGAAAAACACTGTCAAATGCTGATATTAATTTGGATCTTACAATTGGAAATGGATTACAATCTACTGTGCCTGCTGAGGTTGATCCTTTGTATGATGGCCATTTGGATAATGGTGGTATTGGCAGAGATCTTATGATTGGTCAGCCTGCTGGAAGTGAGGTTGGTGATCGTGCAGCATCGTTTGAATCACGGGGTCCAAGTACCAGGAAGCGATGCTTAGAGGAAGGCGGAAGCACAGTTGATAGGCCGTTGGACAGGATTCAGCAGACTGACAGTATAGAAGGAACTCTTATCGATCATAATGTTGATGGCATTGATGAAGAGGCTCCTGAATCTGATAGGATGTTTAAGCGAGCTCGTAGTCTGAATGCCTTTGATTCACTTTATTTTTCAAGTAAAATGGACATGTCAGGTGCTGGGCCCAGTCTTATTAATACTGGCATAAATCTCTCTCGATTAAATTCCTTCAAAAGTGATCTGGCTATTTACAACTCAAATCGAGATTCTAATCGCGCATCATCAGTTATTGCGCTGGATACCATTTGTAGTGATGATCAAGACTCTATGGAAAGTGTTGAGAATTATCCTGGTGTTGTTAGTGATGCTAACGTTAATTCTATGAATGATGCATCAGAGTTCAATTATAGTATACAAGCACAGCAGAGCATCTTCATACCACATGCTGCTGGAAGTTTTGCTAGAGAAATTGGAGGCAGCAGCACAATTGAAGGTGACGAAATACTGAATGAGGTAACATTTACTGGCAATGCCAGGGATCGAATTAGCTTGGGTATCAGTGGTGGTAGTGTTGGTATGGGTGCTAGTCATGAAGCTGAAATCCGTGGTATCGATGCATCTTTACATCAAGCGGATAGCACTATTGGCAATGCCGACATGGTAGGTGAGGTGACTGAGATTGTGGGGCAAAGTGTTGAATCTACGCCAGGGCCTGGGCTTATGGATGAGTTTGCCCCAGGGCTTGCCAGAGAGGAACCTCTTAGTGATAGTCAAAACATGATATCTAGATCTATAAGTAAGGCTGATAGTGCCTCGAAGATCTACTGTTCTATCAAGGCTGACTCTAATGAAAGTGGAGAGAAGATGAGCCATATGCTGGGTAACGATAGCAGTGCCCATCCTTCACTCTCCTGCAATGCAATGCTATGTTCTGGCAATGAGGCATCCAGGGGAGAGGTGACACAAACAGGCAACAAGGAAACAATTACAGATGATTATCTGCTGGATTCTGATAATGCAACAGGAAATGGTTTAGGGCCTCCAATTGGAGAAAATAATTACAATTTGGATGGTGGGGAATTTGATCCTATCAAGCATCACAATAGTTGCTGTCCCTGGGTGAATGAAAATGTTGCGGCAGCTAGTTATAATTATGATATTGAAACTGGTTCTAGTGGTTCTTCAGCGCTTTGTGGTTGGCAACTTACATTGGATGCCCTGGATTCTTTTTTACTTTTAGGTCATATTCCTAGTCAAATGCAGTCTGAATCTGCTGCGTCTTTATGCAAGGATGACCATTTGACTTCCAGGAAAAAAAATTTGACTTCCCAGTCAGTGAACAAAAGTCGGGGGAAGCGTTTTGACTGAACAAATTGGCAAGTCGTGGATAGGTGGTGGTGATTCTCTGCAGTCTAGTATCAATTATGGCCAGTATGAACTCCAAGTAATCTAATTATGCTATAAAAAGTTTGGCCACTGTTTCTTCAACTATTATTTTCTTTTGAAGGACTAGAATAAATAATTGTGCATGCCTGGTTATGATAATGTATAATACTGGTTCTTTTGCAAATTGAAAATCCCGGAGATACTTTTCTGTGGATGGTTTGGCAAGAGCTGTAGTATATATAATCCAACTTCTTGTTTGCATATTTTGTAATGCTATAGTGCATGCATCTGTTGATCTGCTTGCTTCTGTCATTGTTTGGCTAGTGAACATAGCGATGCAGGTTCTGAAATGTTTTCTTCTTTTTTTAAATATCTTGCCACATAATTGTGTGTTCC

Network for GWHGAAEX013310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07967.12	zf-C3HC	59	183	5.60E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	84.860
SRP064423	SRR2545915	Juvenile tuber	60.880
SRP108465	SRR5643513	five period of Gastrodia elata	39.130
	SRR5643514	five period of Gastrodia elata	32.280
	SRR5643515	five period of Gastrodia elata	31.740
	SRR5643524	five period of Gastrodia elata	30.820
	SRR5643525	five period of Gastrodia elata	31.850
	SRR5643528	five period of Gastrodia elata	29.760
	SRR5643658	five period of Gastrodia elata	37.500
	SRR5643659	five period of Gastrodia elata	32.830
	SRR5643660	five period of Gastrodia elata	37.490
	SRR5643661	five period of Gastrodia elata	28.930
	SRR5643662	five period of Gastrodia elata	34.730
	SRR5643663	five period of Gastrodia elata	35.830
	SRR5643664	five period of Gastrodia elata	38.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	80.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	65.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	98.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	66.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.350
SRP279888	Gastro	Gastrodia elata tuber	42.35
	Juven	Juvenile tuber	78.50
	Mother_Gastro	Mother tuber of Gastrodia elata	42.80
	Mother_Juven	Mother tuber of Juvenile	72.09