Detail information of GWHGAAEX013314/evm.TU.scaffold_5.258
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2044 | 0 | 5'-3' exonuclease HKE1/RAT1 |
| nr | gi|695022784|ref|XP_009398535.1| | 0 | PREDICTED: 5'-3' exoribonuclease 4 isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FQ04|XRN4_ARATH | 0 | 5'-3' exoribonuclease 4 |
| trEMBL | tr|C5WX87|C5WX87_SORBI | 0 | Putative uncharacterized protein Sb01g005340 {ECO:0000313|EMBL:EER93302.1} |
| TAIR | AT1G54490 | 0 | exoribonuclease 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 5455588 | 5509978 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013314
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03159.17 | XRN_N | 1 | 254 | 6.20E-95 |
| PF00098.22 | zf-CCHC | 264 | 279 | 6.50E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K20553 | XRN4 | MAPK signaling pathway - plant | map04016 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0004534 | Molecular Function | 5'-3' exoribonuclease activity |
| GO:0004527 | Molecular Function | exonuclease activity |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.630 |
| SRR2545915 | Juvenile tuber | 39.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.560 |
| SRR5643514 | five period of Gastrodia elata | 37.560 | |
| SRR5643515 | five period of Gastrodia elata | 36.600 | |
| SRR5643524 | five period of Gastrodia elata | 34.640 | |
| SRR5643525 | five period of Gastrodia elata | 34.800 | |
| SRR5643528 | five period of Gastrodia elata | 26.830 | |
| SRR5643658 | five period of Gastrodia elata | 39.680 | |
| SRR5643659 | five period of Gastrodia elata | 38.700 | |
| SRR5643660 | five period of Gastrodia elata | 39.960 | |
| SRR5643661 | five period of Gastrodia elata | 35.540 | |
| SRR5643662 | five period of Gastrodia elata | 34.130 | |
| SRR5643663 | five period of Gastrodia elata | 42.530 | |
| SRR5643664 | five period of Gastrodia elata | 42.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.440 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 44.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.37 |
| Juven | Juvenile tuber | 58.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 57.98 | |
| Mother_Juven | Mother tuber of Juvenile | 59.00 |