Gene detail

Detail information of GWHGAAEX013316/evm.TU.scaffold_5.262

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1952	5.00E-122	Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains
nr	gi\|672110044\|ref\|XP_008793296.1\|	0	PREDICTED: NF-X1-type zinc finger protein NFXL2 [Phoenix dactylifera]
Swissprot	tr\|Q9FFK8\|NFXL2_ARATH	0	NF-X1-type zinc finger protein NFXL2
trEMBL	tr\|M0S988\|M0S988_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18970_001}
trEMBL	tr\|M0S988\|M0S988_MUSAM	2.00E-07	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18970_001}
TAIR	AT5G05660	5.00E-122	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	5674339	5710989	+

Transcript Sequence
>GWHTAAEX013316 ATGGCTACGAGCTACTCAGCTGCCGTTATCTCCTCGACTTCGGCAAATCCTCCCGACTTCATCTCTGATTCAGACAGCGGAAGCTGCAGCGGCGGAGATGACGCATCTGCACTCGAGGACTCTATCTTTTCCGCCTATCTCCAGCTCTTTGGCGGCCATTCTCCCTCCCATGATCTTGTCAAGATCCGTTCCTTCCTTTCTTCCGCCGCCGGCCGCGGCGGTCCCTTCGTCGTCTGCCTTATTTGCTTGGAACGCATCCGTCCCTCCGATCCCATCTGGTCCTGTTCCTCTGGATGCCGCGCTTTCTTTCATCTCCATTGCATCCAGAACTGGGCAAACCAGCCCTCGCACCGCCTTGCCTCGTCTTCTTCTCCTTCCACCCACGTCTACTCAGACTGGCATTGCCCCAAATGCCGCCTTTCATATGCCCGAGACATGGTTCCCCGTTATTATTTGTGCTTTTGCGGAAAGGTTGAAGATCCGCCCTATGATCCGTGGATCCTCCCTCACTCTTGTGGAGAGGTCTGCGGCCGCCCTCTACGCGGAAATTGCGGCCATGAATGTCTCCTTCTCTGTCACCCTGGGGCTTGTCCACCGTGCCCTAAGCTTGTTACTGCCCACTGCTTCTGCGGCTCTCACAAAGATGCCCGCCGGTGTGCGCAGAAGCAATTTTCATGTAATCAGCCATGCCCTAGGTTATTGCCATGCCGAACCCATCGCTGCATTGAGCCTTGCCATGACGGTCCCTGCCCTCCTTGCCAGGTTAAGGCCCTGTACAAGTGCGCTTGTGGGAAGACAGAGGAGGAAAGAGTATGCGCAGACAGTGACTTCCAATGCGATAAGTCTTGTAATGGGATTCTTCTGTGTGGAAAGCACAAGTGCAGTAGTGGTTGCCATTCTGGACCATGCGGGGCTTGTCCTCAACAAGGCAGGAGGACTTGCCCTTGTGGAAAGAAGGAGCACAAGGGGGCTTCATGTGATGAGGAAGTGGCTACTTGTGGTTTGACGTGCGAGAAAATGCTGAGCTGTGGGTTTCATAGATGCCCAGAAAGGTGCCACCGTGGGAATTGCGTGGAGACTTGTAGGATTGTGCTTCTCAAGGCTTGCCGGTGCAGGAGCTTGAAAAAGGAGATTCCTTGCCATCAAGATTTGATCTGTGAAAGGAAATGCTTAAGAATGCGAGATTGTGGCCGCCATGCATGTAAGCATCGTTGTTGTAATGGGGAATGTCCACCTTGTCAAGAGGTTTGTGGAAGGAAGCTTCGTTGTAACAATCATAAATGCCCTTCCTTATGTCATAGAGGTTCTTGTGCTCCATGCCCTTTGATGGTGACAATTTCTTGCTTTTGTGGAGAAACATATTTTGAGGTTCCATGTGGTGTTGAAAATAATCAAAAGCCTCCAAAATGTCCCAAAACTTGTCATGTGCCTCGTTTGTGCAGACACCAATCTAAGAATCGGCCTCACAAATGTCACTACGGTGCTTGCCCACCTTGCAGAATCATTTGTAGTGAACAACTTAGATGCGGCCATAGCTGTAAACATAGATGTCATGGTGCAATTCCTCCTCCCAACCCTGATTTCACACTGAAACCAAAGAAGAAGAAAATGGAGAAACATGTGGAAGTTACACCTGGATCAGACTGCCCTGATTGTGAAGAAATTATTTGGGTAGGATGCCTGGGCCAACATTTGGGTGAAGAACGCCCGATGATTTGTTCAAAGAAGACACGGTTTTCATGCAATAACTTGTGTGGCAGTCCTCTTTCTTGTGGCAATCATTACTGCACAAAGTCTTGCCATGCTATGAAGCATCAGCCGTCAACATTGGATGGACAAGGAAGTTTTAAGGATGATTTGACAAAAGAACAAGTGCTTTTACTTCTAAAAGAGGAAAGTGAACTTGCAGAGTCATGCGAAGAGTGTCTTCTTCTTTGTGAAAAGGAAAGATTTAATAAAATGTCTAATTACTTTTCTTGTAATTATAATAATTTTTTTTTGAGGTGTTCCTAA

Network for GWHGAAEX013316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01422.16	zf-NF-X1	184	201	0.0028
PF01422.16	zf-NF-X1	238	253	0.00023
PF01422.16	zf-NF-X1	289	307	0.0019
PF01422.16	zf-NF-X1	343	362	0.0069
PF01422.16	zf-NF-X1	396	413	0.38
PF01422.16	zf-NF-X1	417	441	0.0032
PF01422.16	zf-NF-X1	490	500	3.8
PF01422.16	zf-NF-X1	591	601	0.33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-X1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.190
SRP064423	SRR2545915	Juvenile tuber	35.480
SRP108465	SRR5643513	five period of Gastrodia elata	43.990
	SRR5643514	five period of Gastrodia elata	38.390
	SRR5643515	five period of Gastrodia elata	37.080
	SRR5643524	five period of Gastrodia elata	38.000
	SRR5643525	five period of Gastrodia elata	35.050
	SRR5643528	five period of Gastrodia elata	29.930
	SRR5643658	five period of Gastrodia elata	38.440
	SRR5643659	five period of Gastrodia elata	47.200
	SRR5643660	five period of Gastrodia elata	51.220
	SRR5643661	five period of Gastrodia elata	46.240
	SRR5643662	five period of Gastrodia elata	48.300
	SRR5643663	five period of Gastrodia elata	46.210
	SRR5643664	five period of Gastrodia elata	47.520
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.920
SRP279888	Gastro	Gastrodia elata tuber	50.80
	Juven	Juvenile tuber	55.89
	Mother_Gastro	Mother tuber of Gastrodia elata	38.93
	Mother_Juven	Mother tuber of Juvenile	56.24