Detail information of GWHGAAEX013318/evm.TU.scaffold_5.264


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|94969123|ref|YP_591171.1|2.00E-133cysteine synthase [Candidatus Koribacter versatilis Ellin345]
KOGKOG12523.00E-180Cystathionine beta-synthase and related enzymes
nrgi|743774724|ref|XP_010917723.1|0PREDICTED: cysteine synthase [Elaeis guineensis]
Swissprottr|Q9XEA6|CYSK1_ORYSJ0Cysteine synthase
trEMBLtr|M0SJA4|M0SJA4_MUSAM0Cysteine synthase {ECO:0000256|RuleBase:RU003985}
TAIRAT3G224603.00E-180O-acetylserine (thiol) lyase (OAS-TL) isoform A2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001657388115763156+
Transcript Sequence

Network for GWHGAAEX013318

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.24PALP132998.20E-68
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01738cysK Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0006535Biological Processcysteine biosynthetic process from serine
GO:0004124Molecular Functioncysteine synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms224.350
SRR2545915Juvenile tuber293.490
SRP108465SRR5643513five period of Gastrodia elata296.490
SRR5643514five period of Gastrodia elata393.700
SRR5643515five period of Gastrodia elata312.920
SRR5643524five period of Gastrodia elata392.250
SRR5643525five period of Gastrodia elata197.380
SRR5643528five period of Gastrodia elata375.970
SRR5643658five period of Gastrodia elata196.950
SRR5643659five period of Gastrodia elata187.210
SRR5643660five period of Gastrodia elata152.420
SRR5643661five period of Gastrodia elata205.460
SRR5643662five period of Gastrodia elata178.420
SRR5643663five period of Gastrodia elata204.050
SRR5643664five period of Gastrodia elata183.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1291.600
SRR6049655Rhizomagastrodiae_C368-T10_good_1394.470
SRR6049656Rhizomagastrodiae_C368-T07_good_1342.490
SRR6049657Rhizomagastrodiae_C368-T07_good_1254.770
SRR6049658Rhizomagastrodiae_C368-T04_good_1294.300
SRR6049659Rhizomagastrodiae_C368-T04_good_1281.320
SRR6049660Rhizomagastrodiae_C368-T01_good_1272.190
SRR6049661Rhizomagastrodiae_C368-T04_good_1273.320
SRR6049662Rhizomagastrodiae_C368-T01_good_1402.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1364.520
SRR6049664Rhizomagastrodiae_C368-T10_good_1430.230
SRR6049665Rhizomagastrodiae_C368-T10_good_1430.230
SRP279888GastroGastrodia elata tuber 299.69
JuvenJuvenile tuber335.32
Mother_GastroMother tuber of Gastrodia elata 346.16
Mother_JuvenMother tuber of Juvenile 411.27