Gene detail

Detail information of GWHGAAEX013319/evm.TU.scaffold_5.265

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|379729731\|ref\|YP_005321927.1\|	2.00E-13	peptidase c14 caspase catalytic subunit p20 [Saprospira grandis str. Lewin]
KOG	KOG1164	0	Casein kinase (serine/threonine/tyrosine protein kinase)
nr	gi\|672170632\|ref\|XP_008805378.1\|	0	PREDICTED: uncharacterized protein LOC103718369 [Phoenix dactylifera]
Swissprot	tr\|P42158\|KC1D_ARATH	6.00E-57	Casein kinase I isoform delta-like
trEMBL	tr\|M0TS39\|M0TS39_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P20360_001}
TAIR	AT3G03940	0	Protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	5776262	5787898	-

Transcript Sequence
>GWHTAAEX013319 CATGAGTTGTGTTTATGCAAACACTGCAAGACTCGAGACAGCGGGTGAAGGAAAAAGGCATAATAGTAAAAACTAACACACCCCATTCTCTCCATTCCATCCCACAATCTGGACCTCTCCGTCATCACCCTCTACTCATCTCTCTCGCCCCCTTTCCCAAGCGCTCTTCCGCCTCTTCTCCGCCTCCTCGATCCTCGTGAATCCTTCATTTCCTTCGTCCAAAACCTGAACTGCCTCCCTCCATCTCTCTTTTCTGCATCTTCTATCAGGCTCTCTTCTTTTAGAAGTTTGCAGCTGCCTTGTCTGTCTCCCTGTAATGCGAGGCATCTCTGCCTCTCTGCTTGAAGATCGAAGCACGGCAAGGGCGGATTCTTGACCATTCGATCGGGATTGGAACATATATCTTGGAATTTAATGTTGGTGTGACTTGCATGGGGAAAGGATGCCAGAGCTTCGAAGTGGAGCCAGGCAAGCTAGGTTGAAGTCAGAGAAAGCTGAAGACATTCCAAGTCAACCTCAAGGTCTTCAACAAGCTGAAAATTGGGTTGTACCTACTCCAAATAGAACGGGAAGGAGAACTGTGGGAAGAGGAAGAGGTTCAAATGCTGCAGCAGTAGTAAAGGGACCTTCAGCTGCACCTGTCAGGCCAGGAGCTGGTGGTAGGGGTAGAGGGATCAGGCTAATTGATTTAAATCCTGGTCAGCATTGTGAGGCTTTTCCTCGAACTGCTGTTGGGGGAGTTGTAGTTGGTGGTGCCCAAGAGCTTGTGTTGAACCAAACTGCTGGAGTTGTTGGAAAAGATTTTGTGATGGAAGGTGGCAGTGCTGATAAAGCGGTGGGCGTTGAAGATGAATCTACTGCAGCTCCTGTGCCTGAGCGAGTACAATTTGGTAACTCTCCAGCATACAAAATAGAAAGAAAGTTAGGGAAAGGAGGGTTTGGCCAAGTCTATATTGGTCGAAGAATATCTGGTGGGGCAGAAAGGACAGGTCCAGATGCTTATGAGGTAGCCTTGAAGTTTGAACATCGGAATAGTAAAGGCTGCAGTTTTGGTCCGCCATATGAGTGGCAAGTTTATAGTAATCTCAATGGATGTTATGGCATACCATCAGTTCATTACAAGGGCCGTCAAGGAGATTACTATATTTTGGTTATGGATATGCTTGGGCCTAGTCTTTGGGATGTGTGGAATTCTGTTGGACAAGCGATGTCACCAAATATGGTTGCTTGTATTGCTGTTGAAGCAGTATCAATCCTTGAGAAACTTCACCTTAAAGGGTTTGTACATGGAGATGTCAAGCCTGAGAATTTTTTACTTGGCCAACCTGGGACAGCTGATGAGAAAAAGCTTTTCCTTATAGATCTTGGTTTGGCATCAAAATGGAAGGAAGCATCGTCTGGCCAGCATGTTGAGTATGATCAGAGGCCTGATATTTTCAGAGGGACAATAAGATATGCAAGTGTTCATGCCCATTTAGGTCGAACTGGAAGTAGGAGGGATGATCTTGAGTCTTTAGCGTACACACTGGTATTCCTCATCAGGGGAAGGTTACCTTGGCAAGGTTATCAGGGAGACAATAAGAGTTTTCTTGTTTGTAAGAAGAAGATGGCAACCTCTCCAGAGCTGTTATGTTGTTTCTGTCCTCCACCATTTAAACAATTTCTTGAGATGGTGACTAATATGAAGTTTGATGAAGAGCCAAATTATACAAAGCTTATTTCTCTTTTTGAAGGATTGATTGAACCATGCGTTCCGTTGAGACCAATCCGAATTGACGGTGCTTTGAAGGTTGGACAAAAACGGGGCAGGTTACTGGTAAATCTTGAAGAAGATGAACAGCTAAAGAAAAAAGTACGGTTAGGTAGTCCTGCAACCCAGTGGATCTCAGTTTATAATGCAAGGAGACCGATGAAGCAGAGGTATCACTACAATGTTGCTGATGCAAGGCTTCATCAACATGTAGACAAGGGCAATGAGGATGGTCTCTACATAAGTTGTGTGGCTTCGGCTGCAAATCTATGGGCTCTCATTATGGATGCAGGAACAGGTTTCTGTTCCCAGGTTTATGAATTGTCGCCCGTGTTCTTGCATAAGGATTGGATTATGGAGCAATGGGAGAAGAATTATTATATCAGTGCAATTGCTGGCTCAAATAATGGTAGTTCATTGGTTGTTATGTCCAAAGGAACACCGTATACTCAGCAATCTTATAAAGTAAGCGAATCTTTCCCTTTTAAATGGATCAACAAGAAATGGAAAGAAGGTTTCCATGTTACTTCCATGACTACTGCTGGCAGCCGTTGGGGTGTAGTAATGTCAAGGAACTCTGGCTTTTCTGATCAGGTTGTAGAGTTAGATTTTCTTTATCCAAGTGAAGGTATTCATCGTCGGTGGGAGAATGGATACAGGATAACATCAACTGCAGCCACCTCAGATCAAGCTGCTTTTATTTTGAGCATTCCAAAACGGAAGGTGTTAGATGAAACTCAAGAGACTCTTCGAACGTCTGCCTTCCCCAGCAATCATGTAAAGATAGAAGTGTGTACAATAATTCTTTCGAACGCTTTGACGGTTGAGCTGCAGAAGTTTTCCTCTTTCTCAAAGCTGTTTTGAGGCGGAGCATGCTCAAGTCCTTCATACTCTTTTGCTGCAAAGCTGAGGAGCCTTTCCTTCTTCCCAACACTGCCGAGGTAGAATTATTGTGCCTGGTAGAGCTGCCACATATTCTCTATACCCAACAAGAGTAAGATTAGAAAAACAAGAGAAAATTATAGAAACAAACTACTTATAAATTTGAGGTGAGGTGTCCAAGTTTGGATCTTCCTTAACTTTGAGAGAGTTGAAATATGATTTAGAGCGCTATAGGTCACCTTGACTAGAGTTTACATATGTTTTCTAGGCTGCTAGAGGTGAATATTAAGGCTAGCATACGACCCTTATTTATAAGCGAGATGTTGGGGGTCTATTAATGCAAGATAAAATTTTGGGCGAATTGACGCACCTGGCCATGTGGGTTCTATGCGCATGGGCGTGTGACTTGACAATTTGTGCACTAGCCATTTTCTTAAAGGGTTCTCTTGGGGGCGGGTTGGAATCTGTCTAGGCACGTTTAGTCGGGATATTTGGGTAGCATCTCGCCATCTCATAGATCGGCCCGCAGCAATCGCGGTGTGCCCAGGCGTGTGATTGTTACATTCCTGGGCGAGTTGGCTTGGCGCGCTGAGATTTGCGTATGGGTGCATGCGCCTGGGCACACAGATGTGCGTCTGGGTTCATGTGCAGGCTAGGAAAATTGCTTAATATTGTTAGCTGGGTCTTAGTGATTTTTATCTCTCAAGTCGGTTACAACATAACACAAATGTACAAAATAGTAAATTAAGTACTGCAAATACAAGACAAACTAAAACACAATCTTCAGTCTAGAGCAACAAACAGTTAAAGTTTGTGCGTCTGAACTTTCTTAAAATAAAGACTAGACAAAATGATCAATTTACAAG

Network for GWHGAAEX013319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	155	387	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CK1_CK1-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.150
SRP064423	SRR2545915	Juvenile tuber	18.190
SRP108465	SRR5643513	five period of Gastrodia elata	33.040
	SRR5643514	five period of Gastrodia elata	35.480
	SRR5643515	five period of Gastrodia elata	32.740
	SRR5643524	five period of Gastrodia elata	33.450
	SRR5643525	five period of Gastrodia elata	41.660
	SRR5643528	five period of Gastrodia elata	36.980
	SRR5643658	five period of Gastrodia elata	43.680
	SRR5643659	five period of Gastrodia elata	26.640
	SRR5643660	five period of Gastrodia elata	24.980
	SRR5643661	five period of Gastrodia elata	25.090
	SRR5643662	five period of Gastrodia elata	26.810
	SRR5643663	five period of Gastrodia elata	23.810
	SRR5643664	five period of Gastrodia elata	25.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.220
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.650
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.630
SRP279888	Gastro	Gastrodia elata tuber	20.93
	Juven	Juvenile tuber	33.77
	Mother_Gastro	Mother tuber of Gastrodia elata	18.09
	Mother_Juven	Mother tuber of Juvenile	22.12